Alternatives and similar repositories for rainbowfish:

Users that are interested in rainbowfish are comparing it to the libraries listed below

• karel-brinda / rnftools
  RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
  ☆14Updated 6 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago
• wtsi-svi / ReadServer
  Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
  ☆14Updated 7 years ago
• GATB / short_read_connector
  Short Read Connector (SRC)
  ☆9Updated 2 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 8 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 4 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• JialiUMassWengLab / laSV
  laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…
  ☆12Updated 8 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆18Updated 4 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 8 months ago
• DecodeGenetics / graphtyper-pipelines
  Recommended Graphtyper pipelines
  ☆14Updated 3 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• jkbonfield / crumble
  Exploration of controlled loss of quality values for compressing CRAM files
  ☆34Updated last year
• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 7 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆24Updated last year
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆11Updated 3 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• broadinstitute / SnowmanSV
  Structural variation and indel detection using rolling local string graph assembly
  ☆9Updated 8 years ago