COMBINE-lab / rainbowfishLinks
A succinct colored dBG representation
☆12Updated 7 years ago
Alternatives and similar repositories for rainbowfish
Users that are interested in rainbowfish are comparing it to the libraries listed below
Sorting:
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 8 months ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- ☆36Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 9 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago
- ☆15Updated 5 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago