COMBINE-lab / rainbowfishLinks
A succinct colored dBG representation
☆12Updated 7 years ago
Alternatives and similar repositories for rainbowfish
Users that are interested in rainbowfish are comparing it to the libraries listed below
Sorting:
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆36Updated 5 years ago
- ☆26Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆52Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- a string to graph aligner☆41Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated this week
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 9 years ago