A succinct colored dBG representation
☆12Sep 11, 2018Updated 8 years ago
Alternatives and similar repositories for rainbowfish
Users that are interested in rainbowfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- BWT-based index for graphs☆72Aug 19, 2026Updated 2 months ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 8 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 10 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- RNA-Seq☆24Aug 29, 2018Updated 8 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An efficient index for the colored, compacted, de Bruijn graph☆113Jun 19, 2026Updated 4 months ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Feb 19, 2026Updated 8 months ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 12 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- ☆16Sep 18, 2026Updated last month
- compacted de Bruijn graph construction in low memory☆102Nov 4, 2025Updated 11 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Feb 23, 2025Updated last year
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 3 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆88Mar 7, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆78Nov 26, 2024Updated last year
- ☆16Apr 25, 2019Updated 7 years ago
- Code accompanying the publication for compressed graph annotation☆13Feb 14, 2019Updated 7 years ago
- smith-waterman-gotoh alignment algorithm☆18Sep 1, 2017Updated 9 years ago
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Apr 12, 2018Updated 8 years ago
- Fast and memory-efficient sequencing error corrector☆96Jan 4, 2026Updated 9 months ago