COMBINE-lab / rainbowfish
A succinct colored dBG representation
☆12Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for rainbowfish
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Indel-aware consensus from aligned BAMs☆20Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Contains the description of a file format to store kmers and associated values☆31Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 7 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated 3 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 4 months ago
- Integrated Variant Caller☆17Updated 6 years ago
- ☆14Updated 8 years ago
- blast, shmlast☆21Updated 4 years ago
- Copy number estimation of highly duplicated sequences☆10Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- StriDe Assembler☆25Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 2 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago