sanger-pathogens / pymummer
Python3 module for running MUMmer and reading the output
☆32Updated last month
Alternatives and similar repositories for pymummer:
Users that are interested in pymummer are comparing it to the libraries listed below
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Find Unique genomic Regions☆29Updated last month
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆38Updated last year
- Implementation of ToL genome assembly workflows☆20Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆41Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated this week
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆23Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- ☆32Updated 2 years ago
- Convert HAL to VG☆22Updated 8 months ago
- Differential k-mer analysis☆36Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- ☆20Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago