sanger-pathogens / pymummerLinks
Python3 module for running MUMmer and reading the output
☆33Updated 8 months ago
Alternatives and similar repositories for pymummer
Users that are interested in pymummer are comparing it to the libraries listed below
Sorting:
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- ☆45Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Find Unique genomic Regions☆32Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated last week
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆44Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28Updated 7 months ago
- ☆29Updated 4 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Multithreaded read analysis☆22Updated last week