sanger-pathogens / pymummerLinks
Python3 module for running MUMmer and reading the output
☆33Updated 4 months ago
Alternatives and similar repositories for pymummer
Users that are interested in pymummer are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆30Updated last week
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆42Updated 2 weeks ago
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- ☆31Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated 3 weeks ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 8 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- ☆45Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago