mbhall88 / streamformaticsLinks
Real-time species-typing visualisation for nanopore data.
☆13Updated 2 years ago
Alternatives and similar repositories for streamformatics
Users that are interested in streamformatics are comparing it to the libraries listed below
Sorting:
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Read contamination removal☆25Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Variant call verification☆16Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 10 months ago
- ☆19Updated 8 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 8 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- blast, shmlast☆22Updated 4 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 7 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 7 years ago