mbhall88 / streamformatics

Related projects: ⓘ

• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated last year
• ctmrbio / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 2 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 4 years ago
• emilhaegglund / schavott
  Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
  ☆9Updated 6 years ago
• nickloman / poredb
  ☆19Updated 7 years ago
• lskatz / SneakerNet
  QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run
  ☆11Updated last month
• sharpton / shotmap
  A Shotgun Metagenome Annotation Pipeline
  ☆23Updated 7 years ago
• maxibor / sam2lca
  Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
  ☆9Updated 3 weeks ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated 10 months ago
• fenderglass / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago
• bede / kindel
  Indel-aware consensus from aligned BAMs
  ☆20Updated 10 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆30Updated 3 months ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆24Updated 7 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆14Updated this week
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 5 years ago
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 4 years ago
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆11Updated 3 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 2 years ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆10Updated 5 years ago
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 7 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 6 years ago
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• whatshap / whatshap-gh-backup
  ☆17Updated this week
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 3 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• Askarbek-orakov / ASAR
  Advanced metagenomic Sequence Analysis in R
  ☆15Updated 6 years ago