mbhall88 / streamformatics
Real-time species-typing visualisation for nanopore data.
☆13Updated last year
Alternatives and similar repositories for streamformatics:
Users that are interested in streamformatics are comparing it to the libraries listed below
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 6 years ago
- Read contamination removal☆24Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Variant call verification☆15Updated 2 weeks ago
- Variant call adjudication☆16Updated 7 months ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated last month
- A long read simulator based on badread idea☆20Updated 2 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 6 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- software to identify primers that can distinguish genomes☆21Updated last week
- Genomic Assemblies Merger for NGS☆26Updated last year
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 3 months ago
- ☆14Updated 9 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- ☆19Updated 7 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆15Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago