Alternatives and similar repositories for browniealigner:

Users that are interested in browniealigner are comparing it to the libraries listed below

• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated this week
• langmead-lab / vargas
  ☆25Updated 3 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated last year
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆11Updated 4 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 4 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆21Updated 4 months ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆20Updated 2 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆23Updated 10 months ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 7 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• nluhmann / BlastFrost
  ☆45Updated 3 years ago
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated 2 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆20Updated 3 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆24Updated 3 years ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• hitbc / deSAMBA
  deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
  ☆10Updated 9 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆27Updated 10 months ago