Alignment algorithm for short Illumina reads to a de Bruijn graph
☆17Jun 4, 2019Updated 6 years ago
Alternatives and similar repositories for browniealigner
Users that are interested in browniealigner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated last year
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- ☆19May 10, 2023Updated 2 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆24Aug 25, 2025Updated 6 months ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 7 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- A cheatsheet for most common Stringology tasks☆14Apr 14, 2021Updated 4 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 3 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- ☆13Dec 26, 2025Updated 2 months ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 5 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 2 weeks ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- AlfaPang builds pangenome graphs without alignments or references.☆15Nov 7, 2025Updated 4 months ago
- ☆24Apr 2, 2021Updated 4 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Jan 4, 2024Updated 2 years ago