Variant Effect Prediction for Python
☆16Apr 5, 2017Updated 9 years ago
Alternatives and similar repositories for veppy
Users that are interested in veppy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate an enhanced VCF files from ClinVar XML Full releases☆17Jul 21, 2026Updated 3 weeks ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 5 years ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bad link reporter for GitHub repositories☆13Aug 3, 2026Updated last week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- ☆13Oct 14, 2017Updated 8 years ago
- SNP Extraction Tool for Human Variations☆27Feb 21, 2024Updated 2 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- GenomeWarp translates genetic variants from one genome assembly version to another.☆96Jun 28, 2023Updated 3 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 6 years ago
- ☆12Jun 19, 2026Updated last month
- web-based analysis tool for rare disease genomics☆213Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆17Aug 9, 2018Updated 8 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- Ninja Is Not Just Another OTU Picking Solution☆23Apr 23, 2018Updated 8 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆337May 27, 2025Updated last year
- 🐳 Dockerfiles for bioinformatics tools☆17Jun 3, 2026Updated 2 months ago
- ☆11Dec 8, 2022Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆29Feb 17, 2021Updated 5 years ago
- ☆13Jan 4, 2026Updated 7 months ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 9 months ago
- A tool kit to manage many variant on desktop computer☆13Jan 13, 2026Updated 6 months ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Overall management and deployment of the BRCA Exchange web portal and pipeline scripts☆27Updated this week
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆48Updated this week
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Library for manipulating genomic variants and predicting their effects☆87Jul 9, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆12May 4, 2022Updated 4 years ago
- MyVariant.info: A BioThings API for human variant annotations☆98Jul 29, 2026Updated last week
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago