Variant Effect Prediction for Python
☆16Apr 5, 2017Updated 9 years ago
Alternatives and similar repositories for veppy
Users that are interested in veppy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last month
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Bad link reporter for GitHub repositories☆13Mar 25, 2024Updated 2 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- GenomeWarp translates genetic variants from one genome assembly version to another.☆97Jun 28, 2023Updated 2 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 6 years ago
- web-based analysis tool for rare disease genomics☆203Updated this week
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- ☆13Oct 14, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics pipeline for nanopore sequencing data☆11Jan 4, 2019Updated 7 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated last year
- ☆29Feb 17, 2021Updated 5 years ago
- BITS: Binary Interval Search☆25Apr 26, 2017Updated 8 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 5 months ago
- ☆13Jan 4, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆10Mar 23, 2026Updated 2 weeks ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆49Updated this week
- Overall management and deployment of the BRCA Exchange web portal and pipeline scripts☆27Apr 1, 2026Updated last week
- Ninja Is Not Just Another OTU Picking Solution☆22Apr 23, 2018Updated 7 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- Library for manipulating genomic variants and predicting their effects☆86Updated this week
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆12May 4, 2022Updated 3 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated 11 months ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- MyVariant.info: A BioThings API for human variant annotations☆98Sep 10, 2025Updated 7 months ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- ☆11Dec 8, 2022Updated 3 years ago