solvebio / veppyLinks
Variant Effect Prediction for Python
☆15Updated 8 years ago
Alternatives and similar repositories for veppy
Users that are interested in veppy are comparing it to the libraries listed below
Sorting:
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Generate an enhanced VCF files from ClinVar XML Full releases☆14Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Hemang Parikh☆11Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- ☆16Updated 5 months ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Filters for Next Generation Sequencing☆12Updated 7 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆13Updated 7 years ago