rob-p / BooMLinks
A hash map using the BooPHF perfect hash function
☆13Updated 8 years ago
Alternatives and similar repositories for BooM
Users that are interested in BooM are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆17Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 3 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated this week
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- GBWT in Rust☆43Updated 4 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- A succinct colored dBG representation☆12Updated 6 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆28Updated 4 months ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 5 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆25Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- ☆17Updated 4 years ago