kehrlab / PopDelLinks
Population-wide Deletion Calling
☆35Updated 7 months ago
Alternatives and similar repositories for PopDel
Users that are interested in PopDel are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- ☆31Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆34Updated this week
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- ☆35Updated 5 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆21Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Structural variant caller☆55Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago