lrslab / Giraffe_ViewLinks
Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
☆13Updated 10 months ago
Alternatives and similar repositories for Giraffe_View
Users that are interested in Giraffe_View are comparing it to the libraries listed below
Sorting:
- Variant call verification☆16Updated 2 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 8 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆24Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Read contamination removal☆25Updated last year
- k-mer similarity analysis pipeline☆21Updated 2 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 8 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 2 months ago
- Basecalling configuration prediction through FASTQ files☆21Updated 2 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- ☆12Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated 7 months ago
- transposable element typing pipeline☆18Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated 2 weeks ago
- Find Unique genomic Regions☆30Updated 4 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Better Alignments with Translated HMMER☆21Updated 2 weeks ago