lrslab / Giraffe_ViewLinks
Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
☆13Updated last year
Alternatives and similar repositories for Giraffe_View
Users that are interested in Giraffe_View are comparing it to the libraries listed below
Sorting:
- Variant call verification☆16Updated 8 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Basecalling configuration prediction through FASTQ files☆32Updated 2 months ago
- Find Unique genomic Regions☆32Updated last week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- A novel method for sequence similarity estimation☆28Updated last year
- Read contamination removal☆25Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆40Updated 4 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 2 months ago
- ☆46Updated 2 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Better Alignments with Translated HMMER☆24Updated this week
- Reference bias measuring toolkit☆20Updated 9 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Updated 2 weeks ago
- Fast viral consensus genome reconstruction☆25Updated this week
- ☆14Updated last week
- Python3 module for running MUMmer and reading the output☆33Updated 10 months ago
- sunburst plots for taxonomy - working to update Krona☆44Updated 4 months ago
- Generating UTRs from SHort Reads☆11Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated last month
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Updated last year
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago