Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.
☆13Sep 3, 2024Updated last year
Alternatives and similar repositories for Giraffe_View
Users that are interested in Giraffe_View are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 9 months ago
- This project is designed to find the potential modifications in bacterial genomes.☆15Nov 6, 2024Updated last year
- ☆12May 11, 2025Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- A de novo modification detection tool that targets current features based on 004kit for prokaryotes☆22May 16, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 10 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 2 months ago
- [DEPRECATED] Bamboo: a tool for quality control and error profiling of long-read sequencing data.☆15Mar 26, 2026Updated 3 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 5 years ago
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆27Updated this week
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆18May 12, 2022Updated 4 years ago
- ☆17May 27, 2026Updated last month
- A nextflow pipeline for calling modifications in nanopore reads.☆16Jul 7, 2026Updated 2 weeks ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Jun 4, 2026Updated last month
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast pairwise transmission inference from single genome and/or metagenomic data☆38Updated this week
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆17Sep 30, 2024Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 10 months ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆42Jul 1, 2026Updated 2 weeks ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Jun 17, 2026Updated last month
- Graph-based assembly phasing☆99Nov 25, 2025Updated 7 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Filter SAM file for soft and hard clipped alignments☆53Dec 31, 2025Updated 6 months ago
- Metal Activity Heuristic of Metalloprotein and Enzymatic Sites (MAHOMES) - Predicts if a protein bound metal ion is enzymatic or non-enzy…☆11Apr 19, 2022Updated 4 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Apr 30, 2026Updated 2 months ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- ☆52Nov 24, 2025Updated 7 months ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- snapper☆14Jul 8, 2024Updated 2 years ago