scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
☆13Mar 21, 2026Updated this week
Alternatives and similar repositories for scpca-nf
Users that are interested in scpca-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 2 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- Pairwise Hierarchical Model☆20Mar 11, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆49Updated this week
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- ☆16Jan 6, 2025Updated last year
- ☆19Updated this week
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 5 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- ☆14Aug 30, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis pipeline for the adolescent mouse nervous system project☆24Jun 28, 2018Updated 7 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 2 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆24Aug 20, 2024Updated last year
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- ☆10Oct 6, 2020Updated 5 years ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Mar 17, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- Mapping Alternative Splicing Events to pRoteins☆21Feb 8, 2022Updated 4 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- An R package implementing an idiosyncratic Stan workflow☆15Aug 18, 2022Updated 3 years ago
- Small(-ish) datasets for fun and teaching☆17Apr 5, 2016Updated 9 years ago
- Nextflow-powered MS-DIAL☆12Jan 13, 2025Updated last year
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- python stuff I use☆20Feb 16, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆32Mar 18, 2026Updated last week
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 6 months ago
- Pynocular is a lightweight ORM that lets you query your database using Pydantic models and asyncio☆12May 24, 2022Updated 3 years ago