AlexsLemonade / scpca-nfLinks
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
☆13Updated this week
Alternatives and similar repositories for scpca-nf
Users that are interested in scpca-nf are comparing it to the libraries listed below
Sorting:
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- mitochondrial variant analysis tools☆14Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 2 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 2 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- iread☆24Updated 3 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 6 months ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- kallisto index tag extractor☆20Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- ☆9Updated 5 years ago