AlexsLemonade / scpca-nf
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
☆13Updated 3 weeks ago
Alternatives and similar repositories for scpca-nf:
Users that are interested in scpca-nf are comparing it to the libraries listed below
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last month
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 4 months ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆20Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Explore the cancer relevance of your gene list☆50Updated 2 weeks ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- ☆9Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- WES HLA Typing based on multiple alternative tools☆15Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Updated 11 months ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆26Updated last week
- Create QC and summary reports for Alevin output☆32Updated 2 months ago