AlexsLemonade / scpca-nfLinks
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
☆14Updated last week
Alternatives and similar repositories for scpca-nf
Users that are interested in scpca-nf are comparing it to the libraries listed below
Sorting:
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 2 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 3 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- ☆12Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- iread☆25Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- mitochondrial variant analysis tools☆14Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Updated last week
- Machine learning use cases for teaching☆13Updated 8 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆17Updated this week
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago