epruesse / ymp
Flexible omics pipeline
☆18Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for ymp
- Snakemake tutorial materials☆17Updated 4 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Build sourmash databases for genbank.☆12Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Introduction to Snakemake for Bioinformatics☆18Updated this week
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 8 months ago
- ☆13Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 13 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 7 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- This project has moved and will no longer be edited here. New link ->☆11Updated 7 years ago
- blast, shmlast☆21Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Lossless VCF compression☆18Updated 2 years ago