epruesse / ympLinks
Flexible omics pipeline
☆18Updated 3 weeks ago
Alternatives and similar repositories for ymp
Users that are interested in ymp are comparing it to the libraries listed below
Sorting:
- Build sourmash databases for genbank.☆12Updated 2 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Snakemake tutorial materials☆18Updated 5 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- blast, shmlast☆22Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- RNAsik - more than just a pipeline☆13Updated last year
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 4 years ago
- ☆19Updated 8 years ago
- ☆16Updated 7 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- A FASTQ quality assessment tool☆14Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 2 months ago
- reference free variant assembly☆33Updated last year
- Integrated Variant Caller☆17Updated 7 years ago