Kingsford-Group / kbfLinks
☆15Updated 9 years ago
Alternatives and similar repositories for kbf
Users that are interested in kbf are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆24Updated 3 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- ☆28Updated 8 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 8 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- ☆15Updated 5 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 8 months ago
- ☆13Updated 9 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 weeks ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago