Kingsford-Group / kbfLinks
☆15Updated 9 years ago
Alternatives and similar repositories for kbf
Users that are interested in kbf are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆16Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- ☆28Updated 4 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- ☆25Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 3 years ago
- ☆16Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last week
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Updated 6 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆14Updated 9 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- recompute GFA link overlaps☆26Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 10 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago