Kingsford-Group / kbf
☆15Updated 8 years ago
Alternatives and similar repositories for kbf:
Users that are interested in kbf are comparing it to the libraries listed below
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated 3 months ago
- Long read to reference genome mapping tool☆13Updated 10 months ago
- ☆14Updated 8 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- ☆25Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- ☆15Updated 4 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆14Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Next Index to Query Kmer Intersection☆16Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Variant call adjudication☆16Updated 7 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆19Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- ☆17Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 6 years ago