smangul1 / MiCoPLinks
MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
☆15Updated 3 years ago
Alternatives and similar repositories for MiCoP
Users that are interested in MiCoP are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Dadaist2 🟨 Highway to R☆13Updated 10 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- ☆22Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated this week
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- strain-level analysis tools☆39Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆18Updated 3 years ago
- scripts for microbiome analysis☆11Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated 3 weeks ago
- Neptune: Genomic Signature Discovery☆21Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago