MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
☆16Mar 31, 2022Updated 4 years ago
Alternatives and similar repositories for MiCoP
Users that are interested in MiCoP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline for the identification of fungi in public metagenomics datasets☆17Nov 23, 2020Updated 5 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated last month
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 3 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- ☆16May 22, 2023Updated 2 years ago
- snapper☆13Jul 8, 2024Updated last year
- Model-based Integration of Metabolite Observations and Species Abundances☆25Feb 21, 2020Updated 6 years ago
- ☆12Oct 28, 2021Updated 4 years ago
- ☆12Apr 6, 2021Updated 5 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 4 months ago
- ☆25Apr 20, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 4 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Mar 20, 2026Updated 3 weeks ago
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained f…☆24Apr 2, 2026Updated last week
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆38May 25, 2023Updated 2 years ago
- ☆57Apr 8, 2026Updated last week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆14Nov 20, 2025Updated 4 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 7 months ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 3 years ago
- ☆29Jun 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Nov 17, 2025Updated 4 months ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 3 years ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 4 years ago