bioinformatics-centre / bayesemblerLinks
A Bayesian method for doing transcriptome assembly from RNA-seq data
☆25Updated 10 years ago
Alternatives and similar repositories for bayesembler
Users that are interested in bayesembler are comparing it to the libraries listed below
Sorting:
- StriDe Assembler☆25Updated 8 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 6 years ago
- A gene-targeted assembler tool☆19Updated 8 years ago
- read cloud assembler☆35Updated 6 years ago
- An automated assembly pipeline for microbial genomes☆19Updated 5 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- High-level API for storing and querying sequence variant data☆20Updated 6 years ago
- blast, shmlast☆21Updated 5 years ago
- reference free variant assembly☆34Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- ☆15Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- a string to graph aligner☆41Updated 9 years ago
- A succinct colored dBG representation☆12Updated 7 years ago
- ☆28Updated 8 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Compare assembly graph file formats☆16Updated 10 years ago