bioinformatics-centre / bayesemblerLinks
A Bayesian method for doing transcriptome assembly from RNA-seq data
☆25Updated 10 years ago
Alternatives and similar repositories for bayesembler
Users that are interested in bayesembler are comparing it to the libraries listed below
Sorting:
- StriDe Assembler☆25Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- blast, shmlast☆22Updated 4 years ago
- read cloud assembler☆36Updated 6 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- A gene-targeted assembler tool☆19Updated 7 years ago
- ☆28Updated last month
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 6 years ago
- An automated assembly pipeline for microbial genomes☆17Updated 8 months ago
- Fast and accurate sequence demultiplexing☆28Updated 3 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- reference free variant assembly☆33Updated last year
- de Bruijn Graph REAd mapping Tool☆14Updated 7 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last year
- Rehost of Bridger Assembler from Sourceforge☆7Updated 6 years ago
- ☆15Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆16Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ☆12Updated last month
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- de novo targeted gene assembly☆23Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago