Alternatives and similar repositories for bayesembler

Users that are interested in bayesembler are comparing it to the libraries listed below

• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 7 years ago
• abiswas-odu / Disco
  Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler
  ☆24Updated 6 years ago
• abishara / athena_meta
  read cloud assembler
  ☆35Updated 6 years ago
• rdpstaff / Xander_assembler
  A gene-targeted assembler tool
  ☆19Updated 8 years ago
• dsarov / MGAP
  An automated assembly pipeline for microbial genomes
  ☆18Updated 4 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• Malfoy / BGREAT
  de Bruijn Graph REAd mapping Tool
  ☆14Updated 8 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆20Updated 5 years ago
• ekg / thesis
  my PhD thesis
  ☆36Updated 6 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 7 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 7 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• COMBINE-lab / rainbowfish
  A succinct colored dBG representation
  ☆12Updated 7 years ago
• mpieva / mapping-iterative-assembler
  Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
  ☆18Updated 12 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• statgen / verifyBamID
  ☆28Updated 8 years ago
• jhhung / PEAT
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Updated 4 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• VGP / vgp-tools
  ☆28Updated 7 months ago
• wtsi-svi / ReadServer
  Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
  ☆14Updated 8 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• langmead-lab / vargas
  ☆24Updated 2 months ago
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 5 years ago