bioinformatics-centre / bayesembler
A Bayesian method for doing transcriptome assembly from RNA-seq data
☆25Updated 10 years ago
Alternatives and similar repositories for bayesembler:
Users that are interested in bayesembler are comparing it to the libraries listed below
- StriDe Assembler☆25Updated 7 years ago
- A gene-targeted assembler tool☆19Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- ☆28Updated last year
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- blast, shmlast☆22Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- ☆25Updated 3 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 7 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 5 years ago
- An automated assembly pipeline for microbial genomes☆17Updated 5 months ago
- Integrated Variant Caller☆17Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- read cloud assembler☆35Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- reference free variant assembly☆33Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago