bioinformatics-centre / bayesemblerLinks
A Bayesian method for doing transcriptome assembly from RNA-seq data
☆25Updated 10 years ago
Alternatives and similar repositories for bayesembler
Users that are interested in bayesembler are comparing it to the libraries listed below
Sorting:
- StriDe Assembler☆25Updated 8 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 6 years ago
- A gene-targeted assembler tool☆19Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated last month
- read cloud assembler☆35Updated 6 years ago
- An automated assembly pipeline for microbial genomes☆19Updated 3 weeks ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- reference free variant assembly☆34Updated 2 years ago
- ☆28Updated 8 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- blast, shmlast☆21Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- ☆26Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆15Updated 3 years ago
- Compare assembly graph file formats☆16Updated 10 years ago
- ☆24Updated 4 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 8 years ago
- A succinct colored dBG representation☆12Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Integrated Variant Caller☆17Updated 7 years ago