Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria
☆14Jul 29, 2021Updated 4 years ago
Alternatives and similar repositories for nanostripper
Users that are interested in nanostripper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49Apr 25, 2024Updated 2 years ago
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Dec 9, 2024Updated last year
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- Python3 Read Until API implementation☆11Mar 11, 2020Updated 6 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 10 months ago
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- ☆74Jan 23, 2024Updated 2 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆114Updated this week
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Amplicon Sequencing Analysis Pipeline☆19Sep 12, 2025Updated 7 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 5 months ago
- Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, R…☆16Apr 28, 2026Updated last week
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Jun 18, 2019Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python client library for Guppy☆32Aug 15, 2022Updated 3 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Validate and submit reads using Webin-CLI in batch.☆12Aug 3, 2023Updated 2 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- ☆13Oct 30, 2019Updated 6 years ago
- ☆16Oct 29, 2025Updated 6 months ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated 3 months ago
- Ultrafast Sample Placement on Existing Trees☆140Updated this week
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆83Mar 2, 2026Updated 2 months ago