nodrogluap / nanostripperLinks
Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria
☆14Updated 4 years ago
Alternatives and similar repositories for nanostripper
Users that are interested in nanostripper are comparing it to the libraries listed below
Sorting:
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 11 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Read contamination removal☆25Updated last year
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated this week
- Validate and submit reads using Webin-CLI in batch.☆11Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 2 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated last week
- SARs-CoV-2 Primer schemes☆16Updated 6 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Updated last year
- Colinear block visualisation tool☆31Updated last year
- Remove human reads from a sequencing run☆40Updated last week
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Updated 2 years ago
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Comprehensive resistance detection from WGS data☆19Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- Recombination-free trees☆60Updated 2 months ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago