hallamlab / LCAStarLinks
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
☆16Updated last year
Alternatives and similar repositories for LCAStar
Users that are interested in LCAStar are comparing it to the libraries listed below
Sorting:
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- reference free variant assembly☆34Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 6 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- simple and not slow ORF caller☆21Updated 2 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- GC Skew Test for Bacterial Genomes☆30Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Read contamination removal☆25Updated last year
- Python3 module for running MUMmer and reading the output☆33Updated 7 months ago