hallamlab / LCAStarLinks
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
☆16Updated last year
Alternatives and similar repositories for LCAStar
Users that are interested in LCAStar are comparing it to the libraries listed below
Sorting:
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Find Unique genomic Regions☆32Updated last week
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- blast, shmlast☆21Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- reference free variant assembly☆34Updated 2 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last week
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Read contamination removal☆25Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 9 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- ☆18Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago