hallamlab / LCAStar
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
☆14Updated 9 months ago
Alternatives and similar repositories for LCAStar:
Users that are interested in LCAStar are comparing it to the libraries listed below
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- ☆19Updated 8 years ago
- De novo VIral Genome Annotator☆21Updated 6 months ago
- Build sourmash databases for genbank.☆12Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- blast, shmlast☆22Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- ☆15Updated 7 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- ☆16Updated 6 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 5 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆37Updated 5 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago