hallamlab / LCAStar

Related projects ⓘ

Alternatives and complementary repositories for LCAStar

• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• kdm9 / axe
  Rapid competitive read demulitplexer. Made with tries.
  ☆23Updated last year
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated last year
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated last year
• bede / kindel
  Indel-aware consensus from aligned BAMs
  ☆20Updated last year
• chrisquince / StrainMetaSim
  Strain resolved metagenome simulator
  ☆12Updated 6 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆19Updated 8 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆30Updated 5 months ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 8 years ago
• rrwick / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆8Updated 6 years ago
• marbl / MUMmer3
  MUMmer3
  ☆15Updated 2 years ago
• mdcao / npReader
  Read nanopore sequence reads in real-time
  ☆14Updated 7 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 2 months ago
• aweimann / traitar
  ☆21Updated last year
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆13Updated last month
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• Gardner-BinfLab / deltaBS
  Quantifying the significance of genetic variation using probabilistic profile-based methods.
  ☆17Updated 3 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 7 months ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 5 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆16Updated 8 months ago
• nickloman / poredb
  ☆19Updated 7 years ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago