Alternatives and similar repositories for pipebuffer

Users that are interested in pipebuffer are comparing it to the libraries listed below

• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆12Updated 6 months ago
• 38 / grass
  ☆22Updated 3 years ago
• lh3 / PortableCrystal
  Portable Crystal binary distributions for Linux on x86_64
  ☆15Updated 4 years ago
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated last year
• nh13 / fqme
  ☆21Updated 10 months ago
• vsbuffalo / duckdb-vcf-extension
  ☆11Updated 9 months ago
• ekg / pca
  PCA in rust
  ☆15Updated 2 years ago
• biointec / columba
  Fast Approximate Pattern Matching using Search Schemes
  ☆16Updated 3 months ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated 4 months ago
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 4 years ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆15Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆11Updated 8 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆19Updated 2 years ago
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆24Updated last year
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• CoreArray / PySeqArray
  PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
  ☆14Updated 8 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago
• dnanexus / IndexTools
  IndexTools is a toolkit for extremely fast NGS analysis based on index files.
  ☆17Updated 3 years ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆20Updated this week
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated 2 years ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆16Updated 10 months ago