tfenne / pipebufferLinks
A command line program for large scale buffering between piped programs
☆17Updated 3 years ago
Alternatives and similar repositories for pipebuffer
Users that are interested in pipebuffer are comparing it to the libraries listed below
Sorting:
- Command line tools for IntSpan related bioinformatics operations☆13Updated 4 months ago
- ☆22Updated 3 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated last year
- Polygenic score calculation from VCF in Nim.☆15Updated 4 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Updated 4 years ago
- ziglang + htslib☆20Updated 3 years ago
- Variant call adjudication☆16Updated last year
- ☆22Updated 8 months ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- PCA in rust☆15Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆26Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated 2 years ago
- DNA kmer operations for nim☆14Updated 3 years ago
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- ☆11Updated 8 months ago
- Fast sequence distance estimates☆15Updated 2 weeks ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 8 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated this week
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Alignment-based filtering CLI tool☆52Updated last month
- Fast Approximate Pattern Matching using Search Schemes☆15Updated last month
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 9 months ago