A command line program for large scale buffering between piped programs
☆17Nov 19, 2021Updated 4 years ago
Alternatives and similar repositories for pipebuffer
Users that are interested in pipebuffer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆21Mar 27, 2026Updated 3 months ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Jan 28, 2023Updated 3 years ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 8 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- ☆22Jan 3, 2025Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Updated this week
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Error correction of long reads☆16Jan 30, 2026Updated 5 months ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- ☆15Apr 2, 2025Updated last year
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- sfasta☆35Feb 25, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆18Jan 29, 2025Updated last year
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆32Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 6 months ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- ☆22Jul 28, 2022Updated 3 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago