Alternatives and similar repositories for pipebuffer

Users that are interested in pipebuffer are comparing it to the libraries listed below

• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated 2 months ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• kdm9 / hail
  Hail: extract lines from a file, a la `head -n x | tail -n y`
  ☆9Updated 4 years ago
• 38 / grass
  ☆21Updated 2 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 weeks ago
• vsbuffalo / duckdb-vcf-extension
  ☆11Updated 6 months ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated last month
• chfi / pafview
  ☆17Updated 4 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• jslfree080 / bamscope
  A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)
  ☆10Updated last year
• yhoogstrate / fastafs
  toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
  ☆22Updated 10 months ago
• dib-lab / MQF
  ☆13Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• nh13 / fqme
  ☆22Updated 6 months ago
• lh3 / PortableCrystal
  Portable Crystal binary distributions for Linux on x86_64
  ☆15Updated 4 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 4 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated 10 months ago
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆26Updated 10 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• wormtable / wormtable
  Write-once-read-many table for large datasets.
  ☆27Updated last year
• ekg / pca
  PCA in rust
  ☆13Updated last year
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated 7 months ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago