Deep learning-based prediction of regulatory genome sequences
☆12Apr 20, 2020Updated 6 years ago
Alternatives and similar repositories for DeepGMAP
Users that are interested in DeepGMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- MuRaL is a deep learning framework for building base-resolution mutation rate maps.☆21May 19, 2026Updated 3 months ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Biological insights into the epigenetic ageing clock☆11Feb 11, 2020Updated 6 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆31Jul 21, 2026Updated last month
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- ☆13Sep 6, 2022Updated 3 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated 10 months ago
- Get the consensus sequences from SAM (and BAM) files, ignoring the reference☆14Oct 27, 2019Updated 6 years ago
- A machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics …☆15Oct 6, 2022Updated 3 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Sequence-to-function deep learning frameworks for engineered riboregulators☆14Aug 3, 2023Updated 3 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 7 months ago
- A python module to draw a circular dendrogram☆21Nov 10, 2024Updated last year
- ☆45May 8, 2024Updated 2 years ago
- Deep learning the cis-regulatory code for gene expression in selected model plants☆25Mar 15, 2024Updated 2 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 8 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Statistical analysis, clustering and visualinzing scientific data with hassle free☆26Jun 14, 2026Updated 2 months ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Updated this week
- my code from working through Zed Shaw's book☆14May 5, 2016Updated 10 years ago
- Secure FTP☆11Jul 28, 2018Updated 8 years ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- JavaScript library for Multiple Sequence Alignment☆26Jan 7, 2024Updated 2 years ago
- ☆10Mar 17, 2021Updated 5 years ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- RDKit Docker images☆20Jul 6, 2022Updated 4 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 11 months ago
- Basic example for using OpenLayers 6 with React and functional components.☆24Feb 3, 2025Updated last year
- ☆15May 11, 2018Updated 8 years ago
- ☆32Nov 25, 2019Updated 6 years ago