koonimaru / DeepGMAPLinks
Deep learning-based prediction of regulatory genome sequences
☆12Updated 5 years ago
Alternatives and similar repositories for DeepGMAP
Users that are interested in DeepGMAP are comparing it to the libraries listed below
Sorting:
- ☆24Updated 3 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…☆9Updated 2 years ago
- ☆9Updated last year
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆11Updated 4 months ago
- ☆10Updated 5 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Updated last year
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 months ago
- WebApp for DNA variants interpretation☆13Updated 3 weeks ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 3 weeks ago
- This BLENDER has been sunsetted☆16Updated 9 months ago
- ARCHIVED: this has been folded into the owlapi☆11Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- A python package for optimizing processing pipelines using statistical design of experiments (DoE).☆24Updated 3 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- ☆30Updated 3 weeks ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆22Updated 4 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- A novel biclustering algorithm for analyses of transcriptomic data.☆18Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.☆16Updated 8 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago