Alternatives and similar repositories for pg-gan

Users that are interested in pg-gan are comparing it to the libraries listed below

• lntran26 / donni
  machine learning applications for dadi
  ☆16Updated last year
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆44Updated 3 months ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆50Updated 7 months ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated 2 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 5 years ago
• ulasisik / balancing-selection
  ☆13Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 7 years ago
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated 2 months ago
• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆52Updated last year
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 6 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• avaughn271 / AdmixtureBayes
  ☆21Updated last year
• russcd / Ancestry_HMM
  ☆32Updated 3 years ago
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 4 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆88Updated last year
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆36Updated 2 years ago
• ANGSD / NgsRelate
  ☆46Updated 10 months ago
• gbradburd / SpaceMix
  ☆30Updated 3 years ago
• mdrasmus / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆58Updated 10 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆28Updated last year
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 10 years ago
• tulerpetontidae / psmc-python
  A reimplementation of a classical PSMC method in python for educational purposes
  ☆17Updated last year
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆28Updated last month
• ANGSD-wrapper / angsd-wrapper
  Utilities for analyzing next generation sequencing data.
  ☆15Updated 4 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 5 years ago
• gvbarroso / iSMC
  The integrated Sequentially Markovian Coalescent
  ☆15Updated 2 weeks ago
• bodkan / slendr
  Population genetic simulations in R
  ☆63Updated last week