Alternatives and similar repositories for PipeMaster:

Users that are interested in PipeMaster are comparing it to the libraries listed below

• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 2 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 2 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆15Updated 2 months ago
• marcomilanesi / BITE
  BITE: BioInformatics tools for everyone
  ☆19Updated 6 months ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆12Updated 2 months ago
• nstenz / TICR
  ☆26Updated 3 years ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 2 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆47Updated 6 months ago
• BenjaminPeter / rangeexpansion
  ☆11Updated 7 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆16Updated 11 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated 4 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• omys-omics / triangulaR
  Calculate Hybrid Index and Heterozygosity from SNP data
  ☆10Updated last month
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆27Updated 11 months ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated last year
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆13Updated 2 months ago
• sjoleary / SNPFILT
  ☆17Updated 7 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 4 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆15Updated 7 months ago
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 3 years ago
• Capblancq / RDA-landscape-genomics
  ☆28Updated 3 years ago
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆27Updated 3 weeks ago
• FePhyFoFum / SortaDate
  ☆17Updated 4 years ago
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 4 years ago
• edgardomortiz / paralog-finder
  Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
  ☆10Updated 5 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆19Updated last year