Alternatives and similar repositories for PipeMaster

Users that are interested in PipeMaster are comparing it to the libraries listed below

• thierrygosselin / assigner
  Population assignment analysis using R
  ☆16Updated 5 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆38Updated last year
• nstenz / TICR
  ☆26Updated 4 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆54Updated 5 months ago
• marcomilanesi / BITE
  BITE: BioInformatics tools for everyone
  ☆21Updated last year
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆17Updated 3 years ago
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• FePhyFoFum / quartetsampling
  Quartet Sampling method for phylogenetic branch support evaluation
  ☆19Updated last year
• lutteropp / QuartetScores
  Code for computing various support scores for internodes
  ☆19Updated 5 years ago
• bodkan / demografr
  A framework for simulation-based inference in evolutionary biology
  ☆26Updated last week
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆33Updated 4 years ago
• chaoszhang / TAPER
  Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…
  ☆15Updated last year
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 3 years ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• FePhyFoFum / SortaDate
  ☆18Updated 5 years ago
• BenjaminPeter / rangeexpansion
  ☆14Updated 8 years ago
• esayyari / DiscoVista
  ☆42Updated 2 years ago
• melisaolave / SNPs2CF
  An R function to compute Concordance Factors from SNP datasets
  ☆15Updated this week
• NovembreLab / feems
  ☆22Updated 3 weeks ago
• edgardomortiz / paralog-finder
  Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
  ☆10Updated 6 years ago
• mgaynor1 / nQuack
  An R package for predicting ploidal level from sequence data using site-based heterozygosity 
  ☆17Updated last week
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆17Updated 2 months ago
• z0on / RDA-forest
  association analysis of distance matrices using gradient forest approach
  ☆16Updated 2 months ago
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• rufimov / ParalogWizard
  ☆13Updated 8 months ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆20Updated 2 years ago
• macroevolution / bamm
  A program for multimodel inference on speciation and trait evolution
  ☆35Updated 8 years ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆16Updated 7 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 4 months ago