kr-colab / locatorLinks
deep learning prediction of geographic location from individual genome sequences
☆50Updated 4 months ago
Alternatives and similar repositories for locator
Users that are interested in locator are comparing it to the libraries listed below
Sorting:
- genotype dimensionality reduction with a VAE☆45Updated 2 months ago
- Methods for examining PCA locally along the genome.☆79Updated 9 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Population genetic simulations in R 🌍☆59Updated this week
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- microhaplotype visualizer and analyzer☆19Updated 3 years ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆42Updated 4 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆40Updated 8 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆42Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- Workshop on Genomics - Genomics Adventure☆41Updated 4 months ago
- ☆26Updated 4 years ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆78Updated 3 weeks ago
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- Tutorial on Bayesian phylogenetic analysis☆46Updated 7 years ago
- Estimate recombination rates from population genetic data☆66Updated 4 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated last year
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆16Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- R We There Yet?☆30Updated 2 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆33Updated last week
- Tools and Utilities for msmc and msmc2☆47Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 6 months ago