deep learning prediction of geographic location from individual genome sequences
☆52Jan 20, 2025Updated last year
Alternatives and similar repositories for locator
Users that are interested in locator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated 2 weeks ago
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated last year
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 7 years ago
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- feature-based deep learning for the identification of selective sweeps☆59Feb 7, 2026Updated last month
- ☆13Aug 18, 2023Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- A library of standard population genetic models☆139Mar 18, 2026Updated last week
- ☆46Mar 18, 2025Updated last year
- ☆34Jan 14, 2026Updated 2 months ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- Forward-time simulation in Python using fwdpp☆31Mar 3, 2026Updated 3 weeks ago
- ☆21Oct 2, 2024Updated last year
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 4 months ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆213Mar 16, 2026Updated last week
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Simulate ARGs and genomic sequence data using population genetic models☆210Mar 6, 2026Updated 2 weeks ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Updated this week
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated last month
- GONE: Scripts, programs and an example data set☆52Jul 20, 2025Updated 8 months ago
- SNP genotyping in polyploids☆16Aug 12, 2020Updated 5 years ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- ☆30Oct 14, 2022Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- Shiny apps for teaching Population Genetics☆67Feb 4, 2023Updated 3 years ago
- Software for linkage disequilibrium graphical models☆16Apr 6, 2025Updated 11 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- software for the MAPS method☆25Mar 20, 2019Updated 7 years ago
- Tutorial for visualising admixture on a map☆24Jan 4, 2021Updated 5 years ago