ramachandran-lab / SWIFrLinks
Sweep Inference Framework (controlling for correlation)
☆28Updated last year
Alternatives and similar repositories for SWIFr
Users that are interested in SWIFr are comparing it to the libraries listed below
Sorting:
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆28Updated last year
- machine learning applications for dadi☆16Updated last year
- ☆20Updated 5 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Updated 10 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- Repository for pipeline code☆26Updated last year
- R code to compute the Singleton Density Score (SDS)☆30Updated 9 years ago
- ☆17Updated 10 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- toolkit to process gtf files☆17Updated 4 years ago
- ☆21Updated 6 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Repo to analyze population genetic data with many different methods☆15Updated 6 years ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- The SPrime program identifies variants that are introgressed from archaic populations.☆27Updated 3 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated last month
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago