ramachandran-lab / SWIFrLinks
Sweep Inference Framework (controlling for correlation)
☆29Updated last year
Alternatives and similar repositories for SWIFr
Users that are interested in SWIFr are comparing it to the libraries listed below
Sorting:
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- machine learning applications for dadi☆15Updated 6 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Work for the tree sequence inference paper.☆22Updated 4 years ago
- ☆17Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆15Updated 4 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆26Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- ☆20Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Repository for pipeline code☆26Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated last year
- Repo to analyze population genetic data with many different methods☆15Updated 5 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆52Updated 4 months ago
- ☆13Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Transposable element polymorphism identification☆33Updated 5 years ago
- Evaluation of phasing performance☆23Updated 7 years ago