Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
☆44Oct 30, 2025Updated 5 months ago
Alternatives and similar repositories for SLiM-Extras
Users that are interested in SLiM-Extras are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 4 months ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆215Updated this week
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- ☆34Jan 14, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆19May 27, 2022Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆210Mar 6, 2026Updated last month
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- ☆13Mar 7, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated last week
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- A general-purpose forward-time population genetics simulation environment.☆36Feb 4, 2026Updated 2 months ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Read and write VCF and BCF files☆14Oct 16, 2025Updated 5 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆40Nov 15, 2023Updated 2 years ago
- ☆24Mar 15, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- GONE: Scripts, programs and an example data set☆53Jul 20, 2025Updated 8 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Copycat is a simple script to capture and bin the read coverage across a genome from a bam file of read alignments. It relies on bedtoo…☆17Aug 24, 2016Updated 9 years ago
- A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.☆14May 3, 2019Updated 6 years ago
- The integrated Sequentially Markovian Coalescent☆15Mar 10, 2026Updated 3 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Joint inference of heterozygosity rates and runs of homozygosity☆19Dec 12, 2025Updated 3 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆40Dec 27, 2023Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated this week
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 3 weeks ago