mojaveazure / angsd-wrapperLinks
Utilities for analyzing next generation sequencing data
☆17Updated 6 years ago
Alternatives and similar repositories for angsd-wrapper
Users that are interested in angsd-wrapper are comparing it to the libraries listed below
Sorting:
- ☆24Updated 8 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Infer demographic history with the Moran model☆48Updated 2 months ago
- ☆17Updated 9 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 6 months ago
- Tools and Utilities for msmc and msmc2☆48Updated 3 weeks ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆30Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆20Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 11 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Tools to convert to and from vcf format☆14Updated 8 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 5 years ago
- ☆13Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆29Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year