mojaveazure / angsd-wrapperLinks
Utilities for analyzing next generation sequencing data
☆17Updated 7 years ago
Alternatives and similar repositories for angsd-wrapper
Users that are interested in angsd-wrapper are comparing it to the libraries listed below
Sorting:
- ☆24Updated 8 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- ☆17Updated 9 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Infer demographic history with the Moran model☆48Updated 4 months ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆54Updated 4 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆27Updated 6 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Tools to convert to and from vcf format☆14Updated 8 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- ☆20Updated 5 years ago
- ☆31Updated 2 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago