mojaveazure / angsd-wrapper
Utilities for analyzing next generation sequencing data
☆17Updated 6 years ago
Alternatives and similar repositories for angsd-wrapper:
Users that are interested in angsd-wrapper are comparing it to the libraries listed below
- ☆24Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 weeks ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- ☆17Updated 9 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 2 weeks ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated 10 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 6 months ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 4 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆20Updated 4 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- General purpose population genetics software☆12Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- ☆22Updated 10 months ago
- Infer demographic history with the Moran model☆47Updated 10 months ago
- A box of genomics tools☆21Updated 4 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- assembly evaluation tool☆34Updated 2 years ago