avaughn271 / CLUES2Links
The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
☆18Updated 9 months ago
Alternatives and similar repositories for CLUES2
Users that are interested in CLUES2 are comparing it to the libraries listed below
Sorting:
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated last week
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆28Updated last year
- machine learning applications for dadi☆16Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- ☆44Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- ☆31Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆15Updated 2 years ago
- ☆38Updated 3 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- ☆13Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- SV calling for diploid assemblies☆30Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- ☆16Updated 6 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated last month