Alternatives and similar repositories for magic

Users that are interested in magic are comparing it to the libraries listed below

• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆17Updated 4 years ago
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 9 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 3 weeks ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆22Updated 7 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• luntergroup / smcsmc
  Demographic inference from whole genomes
  ☆13Updated 2 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆41Updated 9 months ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 5 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• hemstrow / snpR
  ☆30Updated last month
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• kgori / treeCl
  Clustering phylogenetic trees with python
  ☆25Updated 11 months ago
• duchene / phylomad
  ☆19Updated last year
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 5 years ago
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆14Updated 3 months ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago
• nickloman / ebov
  Ebola virus surveillance
  ☆16Updated 8 years ago
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 5 months ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated last year
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆18Updated this week
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆25Updated last year
• ANGSD / NgsRelate
  ☆43Updated 3 months ago