weissmanlab / magic

Related projects ⓘ

Alternatives and complementary repositories for magic

• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 8 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 3 months ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆28Updated 4 months ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆15Updated 4 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• emvolz-phylodynamics / treestructure
  ☆17Updated 6 months ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated 10 months ago
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 4 years ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 4 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 8 years ago
• hemstrow / snpR
  ☆28Updated 2 weeks ago
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆12Updated 3 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• duchene / phylomad
  ☆19Updated 5 months ago
• singhal / popgen_tutorial
  ☆11Updated 5 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆23Updated 5 years ago
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆13Updated last year
• j-a-thia / genomalicious
  A smorgasbord of R functions for population genomic analyses
  ☆17Updated last month
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• lntran26 / donni
  machine learning applications for dadi
  ☆13Updated 7 months ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 2 months ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆14Updated last year
• martinsikora / admixr
  an R package for admixture analyses
  ☆16Updated 9 years ago