Alternatives and similar repositories for magic:

Users that are interested in magic are comparing it to the libraries listed below

• emvolz-phylodynamics / treestructure
  ☆17Updated 9 months ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆16Updated 4 years ago
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 5 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last week
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• singhal / popgen_tutorial
  ☆11Updated 5 years ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated last year
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• hemstrow / snpR
  ☆29Updated last week
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 7 months ago
• NovembreLab / eems-around-the-world
  Repo to analyze population genetic data with many different methods
  ☆15Updated 5 years ago
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 5 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• kjgilbert / QstFstComp
  R Package for performing Qst-Fst analyses
  ☆21Updated 7 years ago
• DRL / blobtools-light
  Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!
  ☆8Updated 9 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆24Updated 5 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• lntran26 / donni
  machine learning applications for dadi
  ☆14Updated 3 weeks ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆15Updated 5 years ago
• popsim-consortium / manuscript
  PopSim consortium manuscript
  ☆7Updated 4 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆19Updated 4 months ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 5 months ago
• aewebb80 / VESPA
  VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
  ☆14Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago