weissmanlab / magicLinks
Minimal Assumption Genomic Inference of Coalescence
☆14Updated 2 years ago
Alternatives and similar repositories for magic
Users that are interested in magic are comparing it to the libraries listed below
Sorting:
- ☆18Updated 10 years ago
- Module for analysing admixture graphs☆29Updated 7 years ago
- SNP genotyping in polyploids☆17Updated 5 years ago
- ☆18Updated 4 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 6 months ago
- An R package to help in plotting PCA results nicely.☆12Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Demographic inference from whole genomes☆13Updated 3 years ago
- An R interface for the ADMIXTOOLS software☆34Updated 2 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- an R package for admixture analyses☆17Updated 10 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Repo to analyze population genetic data with many different methods☆15Updated 6 years ago
- Sweep Inference Framework (controlling for correlation)☆28Updated last year
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- initial commit☆26Updated 3 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 9 years ago
- ☆19Updated last year
- ☆17Updated 10 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- A series of scripts to automate sequence workflows☆19Updated 2 weeks ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- ☆11Updated 3 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Updated 10 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated last month
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 10 years ago