Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
☆14May 1, 2023Updated 2 years ago
Alternatives and similar repositories for argweaver
Users that are interested in argweaver are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated 2 weeks ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Aug 9, 2015Updated 10 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆15Jul 17, 2019Updated 6 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆42Oct 17, 2025Updated 5 months ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Signed LD profile regression code☆19Aug 1, 2025Updated 7 months ago
- ☆22May 14, 2024Updated last year
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Simulate ARGs and genomic sequence data using population genetic models☆210Mar 6, 2026Updated 3 weeks ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆49Mar 18, 2026Updated last week
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 9 years ago
- ☆26Apr 14, 2021Updated 4 years ago
- Tools for describing and manipulating demographic models.☆19Updated this week
- ☆34Jan 14, 2026Updated 2 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- Infer a tree sequence from genetic variation data.☆62Mar 22, 2026Updated last week
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆12Sep 4, 2024Updated last year
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆44Oct 30, 2025Updated 4 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- A set of tutorials for msprime and tskit.☆21Mar 11, 2026Updated 2 weeks ago
- Interactive visualization method for ancestral recombination graphs☆20Jan 20, 2026Updated 2 months ago
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward…☆19Mar 17, 2026Updated last week
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated last week
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 4 months ago
- A coalescent simulator for genome-scale sequences☆44Jan 2, 2024Updated 2 years ago
- Repo for "Evolution on rugged adaptive landscapes"☆12Oct 7, 2021Updated 4 years ago