popgenmethods / defiNETtiLinks
defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particular, it is well-suited for population genetic applications.
☆20Updated 7 years ago
Alternatives and similar repositories for defiNETti
Users that are interested in defiNETti are comparing it to the libraries listed below
Sorting:
- Fast inference of fine-scale recombination rates based on fused-LASSO☆53Updated last week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- ☆20Updated 5 years ago
- machine learning applications for dadi☆16Updated 11 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- ☆18Updated 2 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Work for the tree sequence inference paper.☆23Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- ☆21Updated last year
- Tools for dealing with tree sequences coming to and from SLiM.☆28Updated last week
- [mu]tation [s]pectrum [h]istory [i]nference☆27Updated 11 months ago
- Demographic inference from whole genomes☆13Updated 3 years ago
- Transfer coordinates across genomes☆23Updated 7 months ago
- genotype dimensionality reduction with a VAE☆48Updated 9 months ago
- Two locus likelihoods and ARGs under changing population size☆14Updated last week
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 5 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Updated 11 months ago
- ☆26Updated 4 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Updated 3 years ago
- An R package to detect selection in biological pathways☆14Updated last year
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 3 weeks ago
- ☆13Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Infer a tree sequence from genetic variation data.☆60Updated last month
- Sampling and inference of genealogies with recombination☆47Updated 6 months ago
- ☆45Updated 9 months ago