russcd / Ancestry_HMMLinks
☆32Updated 3 years ago
Alternatives and similar repositories for Ancestry_HMM
Users that are interested in Ancestry_HMM are comparing it to the libraries listed below
Sorting:
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- GONE: Scripts, programs and an example data set☆51Updated 6 months ago
- ☆24Updated 8 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆29Updated 3 weeks ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Topology weighting by iterative sampling of sub-trees☆84Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- ☆54Updated 8 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Updated 2 months ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated 2 years ago
- Methods for examining PCA locally along the genome.☆88Updated last year
- ☆43Updated 2 years ago
- Sampling and inference of genealogies with recombination☆51Updated 7 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Tools to convert to and from vcf format☆14Updated 8 years ago