russcd / Ancestry_HMMLinks
☆30Updated 2 years ago
Alternatives and similar repositories for Ancestry_HMM
Users that are interested in Ancestry_HMM are comparing it to the libraries listed below
Sorting:
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Infer demographic history with the Moran model☆48Updated 2 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 11 months ago
- Tools and Utilities for msmc and msmc2☆48Updated 3 weeks ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- ☆13Updated 4 years ago
- GONE: Scripts, programs and an example data set☆48Updated last month
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 3 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 7 months ago
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- ☆24Updated 8 years ago
- Topology weighting from unphased genotypes of any ploidy☆13Updated last month
- Sampling and inference of genealogies with recombination☆32Updated 2 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- ☆41Updated last year
- ☆52Updated 2 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Hybridization detection using phylogenetic invariants☆48Updated 10 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Topology weighting by iterative sampling of sub-trees☆80Updated 7 months ago