Alternatives and similar repositories for Ancestry_HMM

Users that are interested in Ancestry_HMM are comparing it to the libraries listed below

• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆27Updated 6 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 3 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 months ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated last month
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆39Updated 3 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆81Updated 8 months ago
• darwintreeoflife / darwintreeoflife.data
  Interim data for the Darwin Tree of Life Project
  ☆33Updated 5 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆46Updated 2 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆73Updated 4 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆27Updated 7 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆18Updated 4 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 2 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• harvardinformatics / degenotate
  ☆52Updated 3 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆48Updated 10 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• simonhmartin / twisst2
  Topology weighting from unphased genotypes of any ploidy
  ☆15Updated last month
• LauritsSkov / Introgression-detection
  ☆43Updated 3 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago