feature-based deep learning for the identification of selective sweeps
☆59Mar 31, 2026Updated 2 weeks ago
Alternatives and similar repositories for diploSHIC
Users that are interested in diploSHIC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Mar 20, 2026Updated 3 weeks ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆40Nov 15, 2023Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated 3 weeks ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 2 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- ☆32Jan 5, 2023Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast inference of fine-scale recombination rates based on fused-LASSO☆61Feb 10, 2026Updated 2 months ago
- General tools for genomic analyses.☆389Mar 25, 2026Updated 3 weeks ago
- Haplotype based scans for selection☆145Apr 1, 2026Updated 2 weeks ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 4 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆66Apr 9, 2026Updated last week
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated last year
- ☆82Dec 19, 2023Updated 2 years ago
- WinPCA. A package for windowed principal component analysis.☆48Apr 2, 2026Updated 2 weeks ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆159Apr 4, 2026Updated 2 weeks ago
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 4 years ago
- ☆13Mar 7, 2021Updated 5 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- A library of standard population genetic models☆140Mar 23, 2026Updated 3 weeks ago
- Simulate ARGs and genomic sequence data using population genetic models☆210Updated this week
- ☆34Jan 14, 2026Updated 3 months ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago