Performing highly efficient genome scans for local adaptation with R package pcadapt v4
☆44Jul 25, 2025Updated 7 months ago
Alternatives and similar repositories for pcadapt
Users that are interested in pcadapt are comparing it to the libraries listed below
Sorting:
- ☆15Mar 20, 2023Updated 2 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆155Oct 27, 2025Updated 4 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Methods for examining PCA locally along the genome.☆88Aug 13, 2024Updated last year
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- A package for population structure inference from RAD-seq data☆34May 14, 2021Updated 4 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38May 21, 2024Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- ☆13Aug 18, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 10 months ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- ☆13Mar 7, 2021Updated 4 years ago
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago
- ☆34Jan 14, 2026Updated last month
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆168Aug 8, 2024Updated last year
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated 11 months ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 7 months ago
- ☆35Dec 28, 2021Updated 4 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Estimating Effective Migration Surfaces☆110Oct 28, 2023Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 6, 2026Updated 3 weeks ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 10 months ago
- Useful bioinformatic scripts☆60Nov 26, 2024Updated last year
- feature-based deep learning for the identification of selective sweeps☆58Feb 7, 2026Updated 3 weeks ago