fgvieira / ngsF-HMM
Estimation of per-individual inbreeding tracts under a probabilistic framework
☆14Updated last year
Alternatives and similar repositories for ngsF-HMM:
Users that are interested in ngsF-HMM are comparing it to the libraries listed below
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆43Updated last month
- ☆20Updated 4 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆17Updated 9 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- Copy number variation detection using NGS data.☆15Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Evaluation of phasing performance☆22Updated 7 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 6 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- ☆30Updated last week
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- R package for pedigree inference based on SNP data☆26Updated 10 months ago