GONE: Scripts, programs and an example data set
☆57May 12, 2026Updated 5 months ago
Alternatives and similar repositories for GONE
Users that are interested in GONE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Demographic history from the observed spectrum of linkage disequilibrium☆17Updated this week
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆20Mar 31, 2026Updated 7 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 9 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆26Updated this week
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 27, 2026Updated 5 months ago
- ☆22Jan 11, 2024Updated 2 years ago
- Topology weighting from unphased genotypes of any ploidy☆30Aug 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- Haplotype-based inference of recent effective population size in modern and ancient DNA samples☆14Apr 4, 2025Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- Estimation of current effective population using artificial neural networks☆10Jan 4, 2026Updated 9 months ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- ☆36Jun 15, 2023Updated 3 years ago
- ☆114Oct 14, 2021Updated 5 years ago
- ☆33Oct 24, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- ☆13Aug 18, 2023Updated 3 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆74Mar 27, 2026Updated 7 months ago
- General tools for genomic analyses.☆399Mar 25, 2026Updated 7 months ago
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆96Oct 20, 2026Updated last week
- ☆20Oct 2, 2024Updated 2 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆91Jun 14, 2021Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆45Nov 13, 2019Updated 6 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆54Nov 13, 2023Updated 2 years ago