Alternatives and similar repositories for GONE

Users that are interested in GONE are comparing it to the libraries listed below

• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 weeks ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• esayyari / DiscoVista
  ☆39Updated last year
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆35Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 8 months ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 4 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 3 months ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆20Updated 3 weeks ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆52Updated 2 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 weeks ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 10 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 2 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year
• KatharinaHoff / GenomeAnnotation_Workshop
  Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
  ☆16Updated 4 months ago
• BGAcademy23 / smudgeplot
  Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot
  ☆11Updated last year
• speciationgenomics / presentations
  Presentations from the course
  ☆37Updated last year
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 8 months ago