Pinpoints the mutation favored by selection
☆34Nov 2, 2021Updated 4 years ago
Alternatives and similar repositories for iSAFE
Users that are interested in iSAFE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype based scans for selection☆143Mar 10, 2026Updated 2 weeks ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 6 months ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- R code to compute the Singleton Density Score (SDS)☆31Sep 19, 2016Updated 9 years ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated last year
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- ☆16Oct 16, 2017Updated 8 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Sep 2, 2021Updated 4 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Dec 10, 2022Updated 3 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- ☆24Jun 9, 2017Updated 8 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Infer the age of ancestral nodes in a tree sequence.☆25Updated this week
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 7, 2025Updated 8 months ago
- Estimating Effective Migration Surfaces☆111Oct 28, 2023Updated 2 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- ☆34Jan 14, 2026Updated 2 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆13Oct 30, 2019Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆46Mar 7, 2024Updated 2 years ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 5 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆113Jun 24, 2025Updated 9 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆158Oct 27, 2025Updated 5 months ago