alek0991 / iSAFE
Pinpoints the mutation favored by selection
☆32Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for iSAFE
- feature-based deep learning for the identification of selective sweeps☆50Updated 2 months ago
- Tutorial about R package PopGenome☆40Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆56Updated 2 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 2 months ago
- Tools and Utilities for msmc and msmc2☆45Updated last year
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- ☆24Updated 7 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆54Updated 2 weeks ago
- ☆42Updated 7 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆30Updated 6 months ago
- A program to call variants from genome alignment☆76Updated 7 months ago
- paml documentation and tutorials☆45Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆84Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 weeks ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆20Updated last month
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆31Updated last year
- Useful bioinformatic scripts☆50Updated 8 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆33Updated 11 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆50Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago