predicting DFE and alpha from polymorphism data
☆29Oct 4, 2018Updated 8 years ago
Alternatives and similar repositories for polyDFE
Users that are interested in polyDFE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 7 months ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rescale genetic polymorphism data to match a common sample size.☆15Nov 4, 2021Updated 4 years ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- ☆16Aug 25, 2026Updated 2 months ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆34Sep 30, 2021Updated 5 years ago
- Estimation of current effective population using artificial neural networks☆10Jan 4, 2026Updated 9 months ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Mar 4, 2025Updated last year
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 9 years ago
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆45Nov 13, 2019Updated 6 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆22Nov 21, 2022Updated 3 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Oct 21, 2026Updated last week
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆16Apr 5, 2019Updated 7 years ago
- Selection outlier scan with population branch statistic☆14Feb 21, 2024Updated 2 years ago
- ☆22Sep 10, 2020Updated 6 years ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆26Jun 17, 2025Updated last year
- ☆13Sep 11, 2025Updated last year
- Work for the tree sequence inference paper.☆24Oct 19, 2020Updated 6 years ago
- Forward-time simulation in Python using fwdpp☆34Oct 25, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 10 years ago
- Code and data for "Evaluating statistics for the identification of introgressed loci" by Simon H. Martin, John W. Davey and Chris D. Jigg…☆11Jan 23, 2018Updated 8 years ago
- Sorting Intolerant From Tolerant For Genomes☆33Nov 3, 2017Updated 8 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- A method to detect polygenic adaptation in an admixture graph☆12Feb 22, 2018Updated 8 years ago
- method for modeling continuous and discrete population genetic structure☆39Aug 27, 2026Updated 2 months ago