paula-tataru / polyDFELinks
predicting DFE and alpha from polymorphism data
☆28Updated 7 years ago
Alternatives and similar repositories for polyDFE
Users that are interested in polyDFE are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆32Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- ☆24Updated 8 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 6 months ago
- ☆46Updated 2 months ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- ☆13Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- Sampling and inference of genealogies with recombination☆47Updated 6 months ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated 2 months ago
- ☆53Updated 6 months ago
- Topology weighting from unphased genotypes of any ploidy☆18Updated last week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 10 months ago
- ☆25Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- ☆35Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆54Updated 6 months ago