paula-tataru / polyDFE
predicting DFE and alpha from polymorphism data
☆28Updated 6 years ago
Alternatives and similar repositories for polyDFE:
Users that are interested in polyDFE are comparing it to the libraries listed below
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 7 months ago
- Infer demographic history with the Moran model☆47Updated 2 months ago
- ☆24Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last week
- Tutorial on using popular tools for learning about population history☆50Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- ☆29Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Software for detecting introgression using supervised machine learning☆20Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 3 months ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Deleterious mutation prediction pipeline☆13Updated 4 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 2 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆24Updated 4 years ago