predicting DFE and alpha from polymorphism data
☆28Oct 4, 2018Updated 7 years ago
Alternatives and similar repositories for polyDFE
Users that are interested in polyDFE are comparing it to the libraries listed below
Sorting:
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated last year
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- ☆15Updated this week
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- ☆20Sep 10, 2020Updated 5 years ago
- ☆11Mar 4, 2025Updated last year
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 7 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.☆25Sep 19, 2016Updated 9 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- ☆13Sep 11, 2025Updated 5 months ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 7 months ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆23Jun 17, 2025Updated 8 months ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 10 months ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 3 months ago
- The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps☆14Feb 2, 2021Updated 5 years ago
- ☆17Dec 2, 2015Updated 10 years ago