Alternatives and similar repositories for qtcat

Users that are interested in qtcat are comparing it to the libraries listed below

• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆27Updated 5 years ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• cannin / snp_plotter
  snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
  ☆20Updated last year
• deruncie / GridLMM
  GridLMM package
  ☆39Updated last month
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 2 months ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated 5 months ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 5 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated last year
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated last year
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆37Updated 6 months ago
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆45Updated 11 months ago
• stephenturner / hcop
  HGNC Comparison of Orthology Predictions (HCOP)
  ☆14Updated 7 years ago
• vsbuffalo / gplyr
  ☆18Updated 8 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 8 years ago
• Yunuuuu / eheat
  Extended ComplexHeatmap
  ☆11Updated 11 months ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆46Updated last year
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 7 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• favorov / stereogene
  ☆14Updated 3 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• awohns / ldgm
  Software for linkage disequilibrium graphical models
  ☆16Updated 8 months ago
• DudbridgeLab / avengeme
  Statistical properties of polygenic risk scores
  ☆19Updated 6 years ago