Quantitative Trait Cluster Association Test in R
☆26Apr 19, 2021Updated 4 years ago
Alternatives and similar repositories for qtcat
Users that are interested in qtcat are comparing it to the libraries listed below
Sorting:
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- ☆34Jan 14, 2026Updated last month
- PHYLIP package starting with version 4.0a☆19Updated this week
- Secure multi-party linear regression at plaintext speed☆16Mar 20, 2022Updated 3 years ago
- program to estimate admixture coefficients from individual genotype or sequence data☆33Sep 23, 2024Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated last month
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- ☆10Feb 21, 2020Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆44Jul 25, 2025Updated 7 months ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Jan 29, 2026Updated last month
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- Examples using R and 1000 genomes data☆29May 18, 2021Updated 4 years ago
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated last month
- Bayesian hierarchical model for complex trait analysis☆46Feb 17, 2024Updated 2 years ago
- ☆11Dec 24, 2024Updated last year
- Liability Estimation for Case-Control Studies☆10Sep 26, 2020Updated 5 years ago
- An R package to write logs.☆15Dec 8, 2025Updated 2 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 4 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- Opinionated Devops for R Data Products Strictly Without Magic☆14Jan 20, 2025Updated last year
- ☆24Jun 9, 2017Updated 8 years ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year
- Stability Selection with Error Control☆26Jan 30, 2026Updated last month
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated last year
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated 11 months ago
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆30Jul 23, 2021Updated 4 years ago