tskit-dev / msprimeLinks
Simulate genealogical trees and genomic sequence data using population genetic models
☆206Updated 3 weeks ago
Alternatives and similar repositories for msprime
Users that are interested in msprime are comparing it to the libraries listed below
Sorting:
- A library of standard population genetic models☆139Updated this week
- Population-scale Ancestral Recombination Graph (ARG) library☆176Updated this week
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆204Updated last week
- Programs to analyse NGS data for population genetics purposes☆178Updated last year
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Updated 11 months ago
- A variational framework for inferring population structure from SNP genotype data.☆144Updated 3 years ago
- ☆92Updated 7 months ago
- Efficient phylogenomic software by maximum likelihood☆203Updated 4 years ago
- Estimating Effective Migration Surfaces☆109Updated 2 years ago
- Program for analysing NGS data.☆250Updated 10 months ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆193Updated last month
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆249Updated 3 weeks ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆181Updated last month
- Infer a tree sequence from genetic variation data.☆60Updated 2 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated 2 months ago
- Tools test whether admixture occurred and more☆218Updated last year
- Bayesian Evolutionary Analysis by Sampling Trees☆265Updated last month
- Calculate summary statistics and manipulate multiple sequence alignments☆90Updated last year
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 2 months ago
- simple examples of using supervised machine learning for population genetics inference☆39Updated 8 years ago
- Lecture Notes on Computational and Mathematical Population Genetics☆196Updated 4 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆70Updated 4 years ago
- FASTQ sequence quality visualisation with Emoji☆170Updated last week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Updated this week
- a bash pipeline for RAD sequencing☆55Updated 11 months ago
- Bayesian Evolutionary Analysis Sampling Trees☆232Updated last week
- shell tools for processing phylogenetic trees☆117Updated 3 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago