Simulate ARGs and genomic sequence data using population genetic models
☆215May 20, 2026Updated 2 weeks ago
Alternatives and similar repositories for msprime
Users that are interested in msprime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population-scale Ancestral Recombination Graph (ARG) library☆184May 14, 2026Updated 3 weeks ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆220Updated this week
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated 2 months ago
- A set of tutorials for msprime and tskit.☆21Updated this week
- Tools for dealing with tree sequences coming to and from SLiM.☆28May 22, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A library of standard population genetic models☆142Updated this week
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- Fast, whole-genome simulation of the discrete time Wright-Fisher process☆15Apr 6, 2020Updated 6 years ago
- Population genetic simulations in R☆63Apr 24, 2026Updated last month
- A coalescent simulator for genome-scale sequences☆46Jan 2, 2024Updated 2 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Apr 4, 2026Updated 2 months ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49May 26, 2026Updated last week
- Scalable genetics toolkit☆277Mar 2, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Sampling and inference of genealogies with recombination☆56Apr 10, 2026Updated last month
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Apr 10, 2018Updated 8 years ago
- Population genetics notes☆699Jun 1, 2023Updated 3 years ago
- Rust bindings for the tskit library☆18Updated this week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆44May 19, 2026Updated 3 weeks ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 4 months ago
- forward-time population genetic simulation in python☆18Mar 19, 2017Updated 9 years ago
- fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations☆28Oct 7, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated 2 months ago
- Forward-time simulation in Python using fwdpp☆32May 20, 2026Updated 2 weeks ago
- Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself☆44Oct 30, 2025Updated 7 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 4 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24May 29, 2026Updated last week
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Haplotype based scans for selection☆148Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Lecture Notes on Computational and Mathematical Population Genetics☆201May 5, 2021Updated 5 years ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 4 years ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 3 months ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Interactive visualization method for ancestral recombination graphs☆20May 11, 2026Updated 3 weeks ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated 11 months ago
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year