kristinmlee / dmcView external linksLinks
Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
☆13May 1, 2019Updated 6 years ago
Alternatives and similar repositories for dmc
Users that are interested in dmc are comparing it to the libraries listed below
Sorting:
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 10 months ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 2 years ago
- Suit of R-scripts to perform landscape genomic analyses☆13May 25, 2020Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 4 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 6 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 6, 2026Updated last week
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 3 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago
- A set of tools for modelling ancestry patterns along the genome.☆23Jan 22, 2026Updated 3 weeks ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- ☆13May 13, 2024Updated last year
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Oct 8, 2025Updated 4 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 2 months ago
- ☆12Jun 6, 2023Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Sep 27, 2019Updated 6 years ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Dec 17, 2025Updated last month
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- ☆33Jan 14, 2026Updated last month
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Resources for the Col-CEN reference genome assemblies☆11Feb 15, 2022Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Feb 21, 2025Updated 11 months ago
- ☆30Oct 14, 2022Updated 3 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated last month
- ☆13Aug 18, 2023Updated 2 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆11Nov 25, 2024Updated last year
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago