kristinmlee / dmcLinks
Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
☆13Updated 6 years ago
Alternatives and similar repositories for dmc
Users that are interested in dmc are comparing it to the libraries listed below
Sorting:
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 8 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- Infer demographic history with the Moran model☆49Updated 4 months ago
- Genetic maps in autopolyploids☆31Updated 5 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last week
- WinPCA. A package for windowed principal component analysis.☆38Updated this week
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆13Updated 4 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- Analyze and simulate Pool-Seq time series data☆16Updated 3 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- ☆18Updated 2 years ago
- A box of genomics tools☆21Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆27Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- ☆27Updated this week