meganlsmith / delimitR
This repository contains the code and manual for the R package delimitR.
☆16Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for delimitR
- An R function to compute Concordance Factors from SNP datasets☆13Updated last year
- Workflow to detect and phase hybrids in target capture data☆18Updated last year
- R package for analysis of hybrids and hybrid zones☆18Updated 10 months ago
- ☆38Updated last year
- Population assignment analysis using R☆17Updated 2 weeks ago
- ☆25Updated last year
- Scripts for population genetics analysis☆19Updated 2 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated last year
- ☆12Updated 6 months ago
- Quartet Sampling method for phylogenetic branch support evaluation☆16Updated 8 months ago
- ☆16Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated last month
- An R Package to build and simulate coalescent models☆19Updated 7 months ago
- ☆17Updated 6 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- UCE Bioinformatics Pipeline☆15Updated 3 years ago
- Package for species delimitation analysis☆10Updated last month
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Hybridization detection using phylogenetic invariants☆42Updated 3 weeks ago
- ☆25Updated 3 years ago
- ☆11Updated 7 years ago
- The integrated Sequentially Markovian Coalescent☆11Updated 7 months ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆13Updated last year
- Code for computing various support scores for internodes☆18Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆22Updated 3 years ago
- Phylogenetic penalized likelihood☆46Updated 4 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆15Updated 5 months ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆15Updated 2 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago