☆24Mar 17, 2026Updated 4 months ago
Alternatives and similar repositories for ERICA
Users that are interested in ERICA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated 11 months ago
- ☆12Jun 12, 2023Updated 3 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualing species tree from ASTRAL with gene tree discordance☆33Jul 3, 2026Updated 3 weeks ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆63Apr 5, 2018Updated 8 years ago
- Automatically exported from code.google.com/p/densitree☆31Jul 27, 2025Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆255Jun 25, 2026Updated last month
- Topology weighting from unphased genotypes of any ploidy☆29Jun 17, 2026Updated last month
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆48Mar 7, 2024Updated 2 years ago
- ☆14Jul 13, 2020Updated 6 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆58Sep 30, 2022Updated 3 years ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Python script for creating and analyzing simulated bpp datasets published in Flouris et al. 2019.☆10May 12, 2019Updated 7 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 6 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Mar 20, 2023Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- ☆13May 13, 2024Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆202Jan 29, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Oct 21, 2024Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆55Dec 10, 2025Updated 7 months ago
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- ☆12Dec 1, 2020Updated 5 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago