YuboZhangPKU / ERICA

Related projects ⓘ

Alternatives and complementary repositories for ERICA

• xiaoming-liu / stairway-plot-v2
  The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…
  ☆31Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 8 months ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆49Updated 2 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆41Updated 2 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆23Updated 8 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆41Updated 3 weeks ago
• Longhui-Ren / Ancestral_Genome_Reconstruction
  Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO
  ☆13Updated 6 years ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆44Updated 5 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆29Updated 3 years ago
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆35Updated 6 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• Argonum-Clever2 / mike
  ☆26Updated 6 months ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆38Updated 6 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆47Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆40Updated 5 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆10Updated last year
• nbedelman / DiscovarCompGenomics
  ☆11Updated 5 years ago
• bichangwei / PMAT
  An efficient assembly tool for plant mitochondrial genome
  ☆28Updated 5 months ago
• ForBioPhylogenomics / tutorials
  Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
  ☆30Updated 8 months ago
• zhangfumin / domestication
  ☆16Updated 2 years ago
• ShiuLab / PseudogenePipeline
  ☆36Updated last year
• clairemerot / angsd_pipeline
  ☆25Updated last year
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆26Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated 3 weeks ago
• YanCCscu / MEANGS
  MitoDNA extending assembler from NGS data
  ☆20Updated 10 months ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated 8 months ago