YuboZhangPKU / ERICA
☆18Updated last year
Alternatives and similar repositories for ERICA:
Users that are interested in ERICA are comparing it to the libraries listed below
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- Tutorials on evolutionary genomics☆42Updated 2 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆32Updated 10 months ago
- MSMC2 Scripts☆23Updated 10 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆29Updated last month
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- ☆18Updated last year
- ☆17Updated 2 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆35Updated 3 weeks ago
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated 3 weeks ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- ☆37Updated last year
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- ☆28Updated 8 months ago
- ☆12Updated 5 years ago
- ☆19Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Genome Annotation Pipeline☆35Updated 5 months ago
- ☆26Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆11Updated 4 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆15Updated this week
- Hybridization detection using phylogenetic invariants☆44Updated 3 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 weeks ago