Alternatives and similar repositories for Krona

Users that are interested in Krona are comparing it to the libraries listed below

• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆618Updated last year
• tseemann / snippy
  Rapid haploid variant calling and core genome alignment
  ☆547Updated last year
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆427Updated 3 weeks ago
• DerrickWood / kraken2
  The second version of the Kraken taxonomic sequence classification system
  ☆830Updated this week
• ablab / quast
  Genome assembly evaluation tool
  ☆467Updated 10 months ago
• rrwick / Bandage
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆644Updated 2 years ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆388Updated 4 months ago
• stamatak / standard-RAxML
  ☆346Updated 7 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆369Updated 3 years ago
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆436Updated last year
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated 2 weeks ago
• mummer4 / mummer
  Mummer alignment tool
  ☆526Updated 8 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆242Updated 4 years ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆355Updated 3 years ago
• usadellab / Trimmomatic
  ☆268Updated last month
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆693Updated last month
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆432Updated last month
• mothur / mothur
  Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Imm…
  ☆272Updated 2 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆444Updated 2 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆365Updated 3 months ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆440Updated 5 months ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆874Updated 5 months ago
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆373Updated last year
• gmarcais / Jellyfish
  A fast multi-threaded k-mer counter
  ☆515Updated last year
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆504Updated last month
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆532Updated 3 weeks ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆351Updated 2 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆554Updated this week
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆476Updated this week
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆797Updated 2 months ago