Interactively explore metagenomes and more from a web browser.
☆501Dec 22, 2021Updated 4 years ago
Alternatives and similar repositories for Krona
Users that are interested in Krona are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The second version of the Kraken taxonomic sequence classification system☆895Apr 1, 2026Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆344Mar 16, 2026Updated last month
- 🌈 Interactive analysis of metagenomics data☆449Sep 17, 2025Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆373Aug 1, 2025Updated 9 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Apr 25, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast genome and metagenome distance estimation using MinHash☆440Sep 19, 2025Updated 7 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,287Apr 22, 2026Updated last week
- Rapid prokaryotic genome annotation☆976Jan 6, 2026Updated 3 months ago
- SPAdes Genome Assembler☆932Updated this week
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆245Jan 18, 2024Updated 2 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆710Oct 28, 2025Updated 6 months ago
- hybrid assembly pipeline for bacterial genomes☆639Jul 25, 2024Updated last year
- Prodigal Gene Prediction Software☆538Jan 23, 2024Updated 2 years ago
- Genome assembly evaluation tool☆509Nov 14, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆402Mar 16, 2026Updated last month
- Kraken taxonomic sequence classification system☆225Sep 27, 2021Updated 4 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆101Feb 10, 2026Updated 2 months ago
- Classifier for metagenomic sequences☆274Apr 15, 2026Updated 2 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆491Apr 3, 2026Updated 3 weeks ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,341Apr 24, 2026Updated last week
- Versatile open-source tool for microbiome analysis☆745Apr 24, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆730Mar 24, 2026Updated last month
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 4 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆645Feb 27, 2026Updated 2 months ago
- Long-read metagenomic analysis☆111Oct 10, 2023Updated 2 years ago
- bioBakery tools for meta'omic profiling☆313Jun 3, 2025Updated 10 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆412Mar 26, 2026Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆242Jan 20, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool to circularize genome assemblies☆255Apr 6, 2024Updated 2 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆376Updated this week
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆224Apr 21, 2026Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 7 months ago