joey711 / phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
☆600Updated 10 months ago
Alternatives and similar repositories for phyloseq:
Users that are interested in phyloseq are comparing it to the libraries listed below
- Accurate sample inference from amplicon data with single nucleotide resolution☆487Updated last month
- microbiome R package☆294Updated 3 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆342Updated 2 weeks ago
- An R package for data analysis in microbial community ecology☆219Updated this week
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆527Updated last year
- Import qiime2 artifacts to R☆168Updated 3 months ago
- A grammar of graphics for comparative genomics☆654Updated last month
- Publication-ready volcano plots with enhanced colouring and labeling☆424Updated 9 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆442Updated 3 months ago
- R package for microbiome biomarker discovery☆177Updated last month
- Using R language in microbiome analysis☆312Updated last year
- Differential expression of RNA-seq data using the Negative Binomial☆380Updated 2 weeks ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆207Updated last year
- Official repository for the QIIME 2 framework.☆495Updated last month
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆461Updated 4 months ago
- Population genetics notes☆663Updated last year
- A complete pipeline for metagenomic analysis☆399Updated last week
- Tools to work with variant call format files☆257Updated last month
- 📊 Circular and Rectangular Manhattan Plot☆554Updated 10 months ago
- Network construction, analysis, and comparison for microbial compositional data☆163Updated this week
- Easy Amplicon data analysis pipeline☆281Updated 2 weeks ago
- ☆351Updated 6 months ago
- A universal enrichment tool for interpreting omics data☆1,073Updated 3 weeks ago
- Materials for short, half-day workshops☆324Updated this week
- R package for MetaboAnalyst☆339Updated last week
- A comprehensive R package for deep mining microbiome☆185Updated 4 months ago
- Bioinformatics one liners from Ming Tang☆481Updated 4 years ago
- Genomic Data Retrieval with R☆218Updated last month
- Differential analysis of RNA-Seq☆303Updated 8 months ago