joey711 / phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
☆605Updated last year
Alternatives and similar repositories for phyloseq
Users that are interested in phyloseq are comparing it to the libraries listed below
Sorting:
- Accurate sample inference from amplicon data with single nucleotide resolution☆495Updated last month
- microbiome R package☆299Updated 5 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆346Updated last month
- An R package for data analysis in microbial community ecology☆230Updated 2 weeks ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆210Updated last year
- Import qiime2 artifacts to R☆169Updated 5 months ago
- R package for microbiome biomarker discovery☆183Updated 2 months ago
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆540Updated last year
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆444Updated 4 months ago
- 📊 Circular and Rectangular Manhattan Plot☆568Updated last month
- Network construction, analysis, and comparison for microbial compositional data☆165Updated last month
- Differential expression of RNA-seq data using the Negative Binomial☆388Updated 2 months ago
- A grammar of graphics for comparative genomics☆675Updated 3 months ago
- Publication-ready volcano plots with enhanced colouring and labeling☆428Updated 11 months ago
- Source for the QIIME 2 Framework (Q2F).☆501Updated this week
- Genomic Data Retrieval with R☆221Updated 3 months ago
- Population genetics notes☆665Updated last year
- Using R language in microbiome analysis☆323Updated 2 years ago
- A complete pipeline for metagenomic analysis☆409Updated 2 weeks ago
- A comprehensive R package for deep mining microbiome☆187Updated 3 weeks ago
- Make Picrust2 Output Analysis and Visualization Easier☆130Updated this week
- A universal enrichment tool for interpreting omics data☆1,091Updated 3 weeks ago
- Tools to work with variant call format files☆258Updated 2 months ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆462Updated 2 weeks ago
- Visualization and annotation of phylogenetic trees☆870Updated 3 weeks ago
- bioBakery tools for meta'omic profiling☆274Updated last month
- Tutorials on phylogenetic and phylogenomic inference☆381Updated last year
- adegenet: a R package for the multivariate analysis of genetic markers☆186Updated 3 months ago
- Phylogenetic analysis in R☆207Updated last week
- Development repository for the Bioconductor package 'mixOmics '☆192Updated last week