A tool for analyzing trascriptomes of millions of single cells.
☆93Apr 6, 2026Updated last week
Alternatives and similar repositories for pegasus
Users that are interested in pegasus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cloud-based scalable and efficient single-cell genomics workflows☆68Updated this week
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated 11 months ago
- ☆65May 21, 2025Updated 10 months ago
- Bring your single-cell data to life☆97Mar 16, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated 2 years ago
- ☆41Jun 24, 2025Updated 9 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- Code for the paper on t-SNE with variable degree of freedom☆11Jun 27, 2019Updated 6 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Apr 4, 2026Updated last week
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 5 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆45Dec 16, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 8, 2026Updated last week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆90Jun 7, 2022Updated 3 years ago
- Supplementary files and notebooks to recreate figures.☆21Aug 12, 2025Updated 8 months ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆249Apr 1, 2026Updated 2 weeks ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 6 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40May 6, 2022Updated 3 years ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆85Aug 10, 2025Updated 8 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆65Apr 14, 2024Updated 2 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆133Jul 1, 2024Updated last year
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆251Jan 16, 2026Updated 2 months ago
- trajectory inference☆107Jan 27, 2025Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- ☆65Sep 13, 2024Updated last year
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆22Feb 2, 2026Updated 2 months ago
- ☆12May 21, 2025Updated 10 months ago