Alternatives and similar repositories for pegasus

Users that are interested in pegasus are comparing it to the libraries listed below

• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆79Updated 2 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated 3 weeks ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆77Updated last week
• AllonKleinLab / SPRING_dev
  ☆71Updated last year
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆109Updated last month
• lilab-bcb / cumulus
  Cloud-based scalable and efficient single-cell genomics workflows
  ☆67Updated 2 weeks ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆68Updated 2 years ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆107Updated 2 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆78Updated 3 weeks ago
• powellgenomicslab / scPred
  scPred package for cell type prediction from scRNA-seq data
  ☆95Updated last year
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 3 years ago
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆66Updated 4 months ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• LuckyMD / Code_snippets
  A repo with random short code snippets
  ☆41Updated 6 years ago
• theislab / AutoGeneS
  ☆61Updated 4 years ago
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆95Updated 3 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆87Updated 8 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 5 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆69Updated 6 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆130Updated last year
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated 2 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆56Updated last year
• calico / solo
  software to detect doublets
  ☆95Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• r3fang / SnapTools
  A module for working with snap files in Python
  ☆37Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆143Updated last week