calico / scnym
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
☆73Updated last month
Alternatives and similar repositories for scnym:
Users that are interested in scnym are comparing it to the libraries listed below
- spatial transcriptome, single cell☆67Updated last year
- ☆45Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆109Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆57Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Multi-omic velocity inference☆109Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆60Updated 4 months ago
- Geometry-preserving random sampling☆78Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated this week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- ☆98Updated last year
- ☆51Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆113Updated 5 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- ACTIONet single-cell analysis framework☆38Updated 5 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆45Updated last month
- Single-Cell Clustering Assessment Framework☆99Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆54Updated this week
- Regulatory networks with Direct Information in python☆40Updated last year
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆42Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆55Updated 10 months ago
- Batch balanced KNN☆153Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆47Updated last year
- cTPnet Package☆24Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆101Updated last year