Alternatives and similar repositories for scnym

Users that are interested in scnym are comparing it to the libraries listed below

• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆64Updated 2 months ago
• zcang / SpaOTsc
  ☆45Updated last month
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• klarman-cell-observatory / scPhere
  ☆102Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆49Updated 7 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 11 months ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 11 months ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated 3 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 3 years ago
• theislab / scTab
  ☆59Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 10 months ago
• nitzanlab / biolord
  ☆82Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• const-ae / linear_perturbation_prediction-Paper
  ☆49Updated last month
• bowang-lab / DeepVelo
  ☆46Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 10 months ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆135Updated last year
• lilab-bcb / harmony-pytorch
  ☆55Updated 3 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 10 months ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆64Updated last year
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago
• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆48Updated this week