calico / scnymLinks
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
☆75Updated 6 months ago
Alternatives and similar repositories for scnym
Users that are interested in scnym are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- ☆100Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last week
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- Geometry-preserving random sampling☆87Updated 8 months ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆119Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- ACTIONet single-cell analysis framework☆42Updated 9 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆11Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆59Updated 10 months ago
- ☆47Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆62Updated this week
- Nonnegative spatial factorization for multivariate count data☆58Updated 2 years ago
- ☆80Updated 11 months ago
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- cTPnet Package☆25Updated 3 years ago
- Python client for the OmniPath web service☆45Updated 2 weeks ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 years ago
- ☆40Updated last week