calico / scnymLinks
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
☆76Updated 9 months ago
Alternatives and similar repositories for scnym
Users that are interested in scnym are comparing it to the libraries listed below
Sorting:
- ☆45Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- ☆102Updated 2 years ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- ACTIONet single-cell analysis framework☆42Updated last year
- Geometry-preserving random sampling☆89Updated 11 months ago
- cTPnet Package☆25Updated 3 years ago
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- ☆84Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- ☆46Updated last year
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 3 weeks ago
- ☆12Updated 2 years ago
- Multi-omic velocity inference☆111Updated 11 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- ☆56Updated 4 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 3 weeks ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆72Updated this week
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Reproducing result from the paper☆34Updated 4 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago