DongqingSun96 / STRIDELinks
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆17Updated 3 years ago
Alternatives and similar repositories for STRIDE
Users that are interested in STRIDE are comparing it to the libraries listed below
Sorting:
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- CAST package☆40Updated 10 months ago
- ☆53Updated 2 years ago
- ☆22Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- ☆58Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- ☆31Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆68Updated 7 months ago
- ☆27Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- R implementation of GeneTrajectory☆63Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- ☆19Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆12Updated 9 months ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- Information-based dimensionality reduction☆29Updated 8 months ago
- ☆45Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 3 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆21Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 9 months ago