DongqingSun96 / STRIDE
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆18Updated 2 years ago
Alternatives and similar repositories for STRIDE:
Users that are interested in STRIDE are comparing it to the libraries listed below
- ☆44Updated 10 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Single cell omics biology annotations☆50Updated 2 weeks ago
- ☆25Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆21Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 6 months ago
- ☆47Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated last week
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- CAST package☆32Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆29Updated last month
- Accurate and fast cell marker gene identification with COSG☆43Updated last week
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- R implementation of GeneTrajectory☆56Updated 11 months ago
- ☆38Updated 3 months ago
- ☆30Updated 3 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 10 months ago
- cell type specific, trait-associated gene regulation☆21Updated 2 weeks ago