DongqingSun96 / STRIDE
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆18Updated 2 years ago
Alternatives and similar repositories for STRIDE:
Users that are interested in STRIDE are comparing it to the libraries listed below
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆41Updated last year
- R implementation of GeneTrajectory☆51Updated 9 months ago
- ☆44Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last week
- ☆47Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆28Updated 4 months ago
- ☆52Updated last year
- Gene group activity utility functions for Scanpy☆65Updated 3 weeks ago
- Accurate and fast cell marker gene identification with COSG☆40Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆29Updated last month
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- ☆25Updated 3 years ago
- ☆28Updated 3 weeks ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- cell type specific, trait-associated gene regulation☆18Updated last month
- Computational pipeline to process EasySci-RNA data.☆18Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 8 months ago
- ☆54Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆22Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- ☆21Updated 3 months ago
- Create cisTarget databases☆44Updated last year
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- ☆10Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆27Updated 11 months ago
- ☆39Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago