DongqingSun96 / STRIDE
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for STRIDE
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆40Updated last year
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆19Updated last week
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- R implementation of GeneTrajectory☆50Updated 7 months ago
- ☆40Updated 6 months ago
- Single cell omics biology annotations☆48Updated 2 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- ☆25Updated 3 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆12Updated 8 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆27Updated 5 months ago
- ☆32Updated 2 months ago
- Spatial Single Cell transcriptomic library☆17Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆37Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- CAST package☆25Updated 3 weeks ago
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- ☆47Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆17Updated 2 years ago
- Create cisTarget databases☆43Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆25Updated 5 years ago