lilab-bcb / cumulusLinks
Cloud-based scalable and efficient single-cell genomics workflows
☆67Updated this week
Alternatives and similar repositories for cumulus
Users that are interested in cumulus are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- ☆59Updated last year
- ☆51Updated last year
- ☆55Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆79Updated 7 months ago
- scWGCNA☆61Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆77Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- .h5mu files interface for Seurat☆32Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- ☆44Updated 5 months ago
- ☆37Updated 8 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆62Updated 2 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆34Updated 6 years ago
- ☆39Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 months ago