lilab-bcb / cumulusLinks
Cloud-based scalable and efficient single-cell genomics workflows
☆66Updated 2 weeks ago
Alternatives and similar repositories for cumulus
Users that are interested in cumulus are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆59Updated 9 months ago
- ☆34Updated 5 years ago
- ☆35Updated 3 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scWGCNA☆60Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- .h5mu files interface for Seurat☆30Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆47Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- ☆55Updated 4 years ago
- ☆49Updated 10 months ago
- ☆32Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 4 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 9 months ago
- ☆47Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- ☆41Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago