lilab-bcb / cumulus
Cloud-based scalable and efficient single-cell genomics workflows
☆60Updated this week
Alternatives and similar repositories for cumulus:
Users that are interested in cumulus are comparing it to the libraries listed below
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- ☆33Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆34Updated 9 months ago
- ☆59Updated 6 months ago
- ☆53Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆20Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆48Updated 4 years ago
- ☆60Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- Single Cell Analysis of Five'Ends☆47Updated 11 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- ☆31Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆36Updated last month
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- .h5mu files interface for Seurat☆28Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆26Updated 4 months ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago