Tools for analyzing Slide-seq data
☆32Oct 30, 2023Updated 2 years ago
Alternatives and similar repositories for slideseq-tools
Users that are interested in slideseq-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Feb 18, 2019Updated 7 years ago
- Spatial Single Cell transcriptomic library☆22Jan 15, 2026Updated 6 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- simplified cellranger for long-read data☆21Aug 27, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 5 months ago
- ☆13Feb 16, 2019Updated 7 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆21Jan 17, 2023Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- ☆16Sep 8, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆472Jan 22, 2026Updated 5 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 5 months ago
- ☆11May 11, 2023Updated 3 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 6 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 4 months ago
- ☆48Jan 7, 2025Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- ☆13Jan 29, 2021Updated 5 years ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 7 years ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Reproducing result from the paper☆34May 12, 2021Updated 5 years ago