MacoskoLab / slideseq-tools
Tools for analyzing Slide-seq data
☆31Updated last year
Related projects ⓘ
Alternatives and complementary repositories for slideseq-tools
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆20Updated 3 months ago
- ☆12Updated 2 years ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Spatial transcriptomics analyses and decoding in R☆18Updated 2 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- ☆31Updated 5 years ago
- ☆33Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- ☆34Updated 6 months ago
- ☆40Updated 3 weeks ago
- Clone identification from single-cell data☆59Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆20Updated 3 months ago
- ☆39Updated this week
- Multi-resolution Variational Inference☆22Updated last month
- SCDC☆42Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Spatial Single Cell transcriptomic library☆17Updated 8 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆29Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆26Updated 2 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- ☆47Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆27Updated 3 months ago