MacoskoLab / slideseq-toolsLinks
Tools for analyzing Slide-seq data
☆31Updated 2 years ago
Alternatives and similar repositories for slideseq-tools
Users that are interested in slideseq-tools are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆46Updated 8 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 2 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 3 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- ☆49Updated last week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last week
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Single-cell Case Control Analysis☆52Updated this week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- Stitch multiple Visium slides together☆16Updated 3 months ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆34Updated 6 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Updated 4 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Pipeline for designing custom probes against human genes☆20Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- Vaeda method for computational doublet annotation☆18Updated this week
- Information-based dimensionality reduction☆29Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- InstaPrism is an R package for fast implementation of BayesPrism☆47Updated last year
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago