MacoskoLab / slideseq-toolsLinks
Tools for analyzing Slide-seq data
☆31Updated 2 years ago
Alternatives and similar repositories for slideseq-tools
Users that are interested in slideseq-tools are comparing it to the libraries listed below
Sorting:
- The Self-Assembling-Manifold (SAM) algorithm.☆45Updated last year
- ☆53Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- An R package for performing cell typing in SMI and other single cell data☆44Updated 7 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 2 weeks ago
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆29Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Information-based dimensionality reduction☆29Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Pipeline for designing custom probes against human genes☆20Updated last year
- Single-cell Case Control Analysis☆52Updated this week
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated this week
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 11 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆18Updated 11 months ago
- ☆24Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Stitch multiple Visium slides together☆16Updated 2 months ago