Bring your single-cell data to life
☆97Apr 27, 2026Updated last week
Alternatives and similar repositories for cirrocumulus
Users that are interested in cirrocumulus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for analyzing trascriptomes of millions of single cells.☆93Apr 23, 2026Updated last week
- MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)☆19Jun 12, 2024Updated last year
- ☆93Aug 29, 2025Updated 8 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- ☆17Jan 12, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆248Updated this week
- ☆59Jan 2, 2024Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆309Mar 6, 2023Updated 3 years ago
- A tool for semi-automatic cell type classification☆473Updated this week
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- Single cell analysis in the browser☆157Mar 26, 2026Updated last month
- ☆11Jan 7, 2020Updated 6 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆141Feb 20, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last week
- Signature Analysis and Visualization for Single-Cell RNA-seq☆178Jun 10, 2024Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆64Apr 14, 2024Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated 11 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated 9 months ago
- ☆10Feb 12, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- Visualization of scRNA-seq data.☆100Nov 10, 2022Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- Spatial omics analysis toolbox☆374Updated this week
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆32Jul 13, 2023Updated 2 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆189Apr 27, 2026Updated last week
- Cloud-based scalable and efficient single-cell genomics workflows☆68Apr 17, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- software to detect doublets☆98Dec 28, 2024Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆781Jan 6, 2024Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- singleCellNet in Python☆16Feb 25, 2026Updated 2 months ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆360Updated this week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆80Apr 23, 2026Updated last week