Bring your single-cell data to life
☆100Aug 10, 2026Updated this week
Alternatives and similar repositories for cirrocumulus
Users that are interested in cirrocumulus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for analyzing trascriptomes of millions of single cells.☆94Jul 1, 2026Updated last month
- ☆13Apr 16, 2021Updated 5 years ago
- ☆95Aug 29, 2025Updated 11 months ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆263Updated this week
- ☆59Jan 2, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆35Jul 24, 2026Updated 3 weeks ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- Single cell analysis in the browser☆156Mar 26, 2026Updated 4 months ago
- ☆11Jan 7, 2020Updated 6 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆67Apr 14, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Mar 4, 2024Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- Signature Analysis and Visualization for Single-Cell RNA-seq☆184Jun 10, 2024Updated 2 years ago
- Visualization of scRNA-seq data.☆98Nov 10, 2022Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- ☆10Feb 12, 2019Updated 7 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- ☆15Nov 13, 2023Updated 2 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Jul 27, 2026Updated 2 weeks ago
- Spatial omics analysis toolbox☆387Updated this week
- ☆31Jul 27, 2026Updated 2 weeks ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆196Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- singleCellNet in Python☆18Aug 6, 2026Updated last week
- An interactive explorer for single-cell transcriptomics data☆784Updated this week
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆477Jan 22, 2026Updated 6 months ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- R package☆27Aug 16, 2020Updated 5 years ago