Alternatives and similar repositories for AM_2024:

Users that are interested in AM_2024 are comparing it to the libraries listed below

• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• BennyStrobes / surge
  ☆12Updated last year
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆13Updated 2 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 4 years ago
• churchill-lab / scRATE
  Bayesian model selection to detect zero-inflated genes
  ☆8Updated 4 years ago
• liuqivandy / scRNABatchQC
  ☆12Updated 4 years ago
• yanailab / enhance
  ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)
  ☆13Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• jingshuw / descend
  ☆16Updated 3 years ago
• alexQiSong / scSTEM
  Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…
  ☆18Updated 2 years ago
• mhu10 / scPanoView
  ☆11Updated 5 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 6 months ago
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆15Updated 3 weeks ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated 2 months ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 6 months ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated last year
• cole-trapnell-lab / cicero
  ☆12Updated last year
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 3 years ago
• Katsevich-Lab / sceptre
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆28Updated last month
• phipsonlab / SuperCellCyto
  SuperCell for Cytometry data
  ☆12Updated last year
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆13Updated 4 years ago
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆9Updated 3 years ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 8 years ago
• MarioniLab / oor_design_reproducibility
  ☆15Updated last year
• jranek / delve
  Feature selection for preserving biological trajectories in single-cell data
  ☆17Updated last year