anders-biostat / sleepwalkLinks
Exploring dimension-reduced embeddings
☆110Updated 2 years ago
Alternatives and similar repositories for sleepwalk
Users that are interested in sleepwalk are comparing it to the libraries listed below
Sorting:
- ☆94Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- ☆74Updated last year
- R package for differential discovery analyses in high-dimensional cytometry data☆20Updated 3 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Topics In Data Science and Bioinformatics☆78Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 5 months ago
- ☆16Updated last year
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated last year
- Implementation of the matrixStats API for sparse matrices☆54Updated 2 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆63Updated 4 months ago
- ☆24Updated 9 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆75Updated 4 years ago
- flowWorkspace☆45Updated 3 months ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆37Updated 5 months ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆58Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 2 weeks ago
- Interactive Cytometry Data Analysis☆66Updated 2 months ago
- PHATE dimensionality reduction method implemented in R☆79Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆72Updated last month
- Explore and share your scRNAseq clustering results☆50Updated last year
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- Annotated multivariate observation data in R☆47Updated last week
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago