anders-biostat / sleepwalk
Exploring dimension-reduced embeddings
☆110Updated 2 years ago
Alternatives and similar repositories for sleepwalk:
Users that are interested in sleepwalk are comparing it to the libraries listed below
- ☆94Updated 9 months ago
- ☆74Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Interactive Cytometry Data Analysis☆65Updated 3 months ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated 11 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆61Updated last month
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆79Updated 2 weeks ago
- Implementation of the matrixStats API for sparse matrices☆54Updated 8 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated 10 months ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆20Updated last year
- Visualize Cytometry data with ggplot2☆57Updated 11 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated this week
- Topics In Data Science and Bioinformatics☆78Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 5 years ago
- My notes/usage examples for various Bioconductor packages☆15Updated 8 years ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆110Updated this week
- R package for differential discovery analyses in high-dimensional cytometry data☆19Updated last week
- MSigDB gene sets for multiple organisms in a tidy data format☆72Updated 3 weeks ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 months ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 2 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆70Updated 3 months ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- flowWorkspace☆45Updated 10 months ago
- An R package for multivariate adaptive shrinkage.☆91Updated 3 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 4 months ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated last month
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆77Updated 2 weeks ago