Alternatives and similar repositories for sleepwalk

Users that are interested in sleepwalk are comparing it to the libraries listed below

• SaskiaFreytag / schex
  ☆75Updated 2 years ago
• willtownes / glmpca
  ☆96Updated last year
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆85Updated last month
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆107Updated 2 years ago
• waldronlab / data-science-seminar
  Topics In Data Science and Bioinformatics
  ☆79Updated last year
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 3 months ago
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆45Updated last year
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated last year
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆40Updated 5 years ago
• RGLab / flowWorkspace
  flowWorkspace
  ☆47Updated last month
• andreaskapou / scMET
  Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
  ☆24Updated 2 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 7 years ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆37Updated 3 months ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆69Updated 3 months ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆23Updated last year
• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆32Updated 4 years ago
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆66Updated 2 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated last week
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆70Updated 2 weeks ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆48Updated 4 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆79Updated 2 months ago
• Bioconductor / OrchestratingSingleCellAnalysis-release
  An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
  ☆37Updated 2 years ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆81Updated 3 weeks ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆64Updated last month
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆83Updated last year
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 3 years ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 2 months ago
• SingleR-inc / SingleRBook-base
  See https://github.com/LTLA/SingleRBook for the latest version of this content.
  ☆12Updated 3 years ago