immunitastx / monkeybreadLinks
Analyzing cellular niches in spatial transcriptomics data
☆29Updated 7 months ago
Alternatives and similar repositories for monkeybread
Users that are interested in monkeybread are comparing it to the libraries listed below
Sorting:
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated 3 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆33Updated last month
- Multi-modal single cell analysis pipelines☆59Updated last week
- CAST package☆40Updated 8 months ago
- ☆39Updated 9 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆57Updated last month
- .h5mu files interface for Seurat☆32Updated last year
- Multiview Intercellular SpaTial modeling framework☆61Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 4 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 6 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆63Updated last week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated this week
- ☆44Updated last week
- ☆44Updated 8 months ago
- Identification of spatial homogeneous regions☆21Updated 5 months ago
- ☆26Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 6 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆28Updated 5 months ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆105Updated this week
- ☆22Updated 2 years ago
- ☆54Updated this week